| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 53 (1.040) | 53 (1.110) +TCA |
31/96 | NT | 68.0% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 164 total aligned reads displayed.
AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAC > W3110S.gb/3920212‑3920349 | cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:1496132‑M2/67‑70 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAacac > 1:3673015/1‑69 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:487465‑M2/70‑2 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:910120‑M2/9‑3 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:640236‑M2/9‑3 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:4100827‑M2/62‑70 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:4377654‑M2/1‑65 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:3439263‑M2/1‑65 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:846106‑M2/71‑11 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:3725152‑M2/71‑11 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTagag > 1:4471532‑M2/58‑71 (MQ=255) caatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc > 1:921892‑M2/57‑71 (MQ=255) cTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:3312972‑M2/70‑11 (MQ=255) cTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:1769042‑M2/70‑11 (MQ=255) aatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc > 1:3373188‑M2/56‑70 (MQ=255) aatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc > 1:3588699‑M2/56‑70 (MQ=255) tttgaaaacaagaccctcgcttaggcctgtgtccatattacgtgggtaggctcACACATCtt < 1:971952‑M2/9‑1 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc > 1:4165708‑M2/53‑71 (MQ=255) ttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc > 1:1941081‑M2/53‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:260657‑M2/52‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:3582605‑M2/52‑71 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:1803728‑M2/1‑55 (MQ=255) ttCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgaccttaccca > 1:3582842‑M2/1‑54 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:4152807‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:1016322‑M2/55‑4 (MQ=255) aaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:1880684‑M2/49‑69 (MQ=255) gTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagt > 1:455101‑M2/1‑51 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:215096‑M2/24‑1 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1611826‑M2/24‑1 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2967178‑M2/24‑1 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa < 1:4044399‑M2/26‑1 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGGAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca > 1:2217858‑M2/1‑46 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:4217509‑M2/29‑1 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:2730564‑M2/29‑1 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata < 1:2732694‑M2/63‑19 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAAAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:1732174‑M2/1‑45 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:3219415‑M2/41‑71 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcgg < 1:2817965‑M2/71‑31 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:1946783‑M2/37‑71 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:3665088‑M2/37‑71 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:1451560‑M2/36‑71 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:2328735‑M2/36‑71 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa < 1:227718‑M2/34‑1 (MQ=255) gTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:744021‑M2/1‑39 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:3294101‑M2/1‑38 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:3027996‑M2/1‑36 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTCCGAACACtga > 1:1891373‑M2/1‑35 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg < 1:3732369‑M2/38‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:3250195‑M2/28‑71 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:3131266‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:1987825‑M2/70‑41 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:3879769‑M2/1‑29 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:293217‑M2/24‑1 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:2320162‑M2/28‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:1371146‑M2/23‑45 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg > 1:2392184‑M2/23‑69 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGc < 1:4045516‑M2/52‑1 (MQ=255) tattacgttggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1505611‑M2/24‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:822552‑M2/24‑1 (MQ=255) ttacgtgggttggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:4013588‑M2/17‑52 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:2962820‑M2/17‑44 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt < 1:3844892‑M2/54‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:1167082‑M2/17‑70 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:4315860‑M2/16‑70 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1232782‑M2/16‑70 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:2539314‑M2/16‑70 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt < 1:3395283‑M2/55‑1 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAg < 1:756100‑M2/27‑1 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:2120686‑M2/56‑1 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat < 1:3463713‑M2/31‑1 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGa < 1:3116645‑M2/57‑1 (MQ=255) gtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc < 1:1471939‑M2/59‑1 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca < 1:884364‑M2/69‑54 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca < 1:2116836‑M2/69‑54 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:3803184‑M2/1‑16 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca < 1:2269640‑M2/69‑54 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga < 1:4021938‑M2/69‑56 (MQ=255) aGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt > 1:1028911‑M2/1‑13 (MQ=255) ttgtaCGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:1574421‑M2/69‑59 (MQ=255) gtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:4327334‑M2/56‑1 (MQ=255) gtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:2857233‑M2/56‑1 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact > 1:4225913‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:2001549‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggct > 1:1905819‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggct > 1:800544‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggct > 1:2002740‑M2/1‑9 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtttt < 1:3979615‑M2/65‑1 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTa > 1:256602‑M2/6‑71 (MQ=255) ggatcACACATCTTAAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtttt < 1:689403‑M2/65‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:2710378‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:3172657‑M2/67‑1 (MQ=255) aCGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:1386512‑M2/70‑63 (MQ=255) aCGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:4693299‑M2/42‑35 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca > 1:3965021‑M2/1‑7 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:4336266‑M2/2‑70 (MQ=255) aaCACtgatcttacccagcaatagtggacacgcggct > 1:4522979‑M2/1‑5 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:1519173‑M2/1‑71 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGc < 1:559277/51‑1 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGc < 1:205323/51‑1 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc > 1:223557/1‑71 (MQ=255) | AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAC > W3110S.gb/3920212‑3920349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |