| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 69 (1.360) | 39/102 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
Only 100 of 157 total aligned reads displayed.
ATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATG > W3110S.gb/576844‑576981 | cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACt > 1:4067491‑M2/68‑70 (MQ=255)cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg > 1:1407874‑M2/68‑71 (MQ=255)atcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACt < 1:4252944/70‑1 (MQ=255)atcatTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTt < 1:893816‑M2/71‑2 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTgg < 1:3835460‑M2/5‑1 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg > 1:3254523‑M2/67‑70 (MQ=255) catTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtga < 1:4574096‑M2/71‑4 (MQ=255) atTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgat > 1:3797008‑M2/1‑67 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGccc < 1:4543198‑M2/8‑1 (MQ=255) aCGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatct < 1:1524956‑M2/70‑7 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAg > 1:2571791‑M2/61‑71 (MQ=255) cGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatctta < 1:1566377‑M2/71‑9 (MQ=255) gAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttac > 1:692380‑M2/1‑62 (MQ=255) aaaaGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTt > 1:4122377‑M2/1‑61 (MQ=255) aGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccag < 1:727073‑M2/71‑14 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTaa > 1:3061402‑M2/55‑71 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTa < 1:1885406‑M2/16‑1 (MQ=255) cGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaa > 1:2425903‑M2/1‑55 (MQ=255) gTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaat > 1:2598799‑M2/1‑54 (MQ=255) ttGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaata > 1:3614001‑M2/1‑53 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGa < 1:3627166‑M2/20‑1 (MQ=255) gctgctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatc < 1:790870‑M2/56‑6 (MQ=255) ctgctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtg > 1:4445808‑M2/1‑50 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAAc > 1:910178‑M2/48‑65 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGAtggg < 1:3656321‑M2/24‑2 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGt > 1:67361‑M2/48‑71 (MQ=255) tgctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaat > 1:4224402‑M2/1‑49 (MQ=255) tgctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtga > 1:4565205‑M2/1‑49 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTgg < 1:3890239‑M2/28‑1 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCaa > 1:2128482‑M2/43‑52 (MQ=255) aacctcgcttagacctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGa < 1:1616478‑M2/29‑1 (MQ=255) ctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacg < 1:2884066‑M2/71‑28 (MQ=255) ctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacg < 1:4673556‑M2/71‑28 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTgg > 1:2334820‑M2/42‑69 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAg < 1:1028826‑M2/31‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAgg > 1:3869457‑M2/39‑70 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgtg > 1:3608643‑M2/38‑71 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAggtgg < 1:2683865‑M2/35‑2 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgtgt > 1:1312468‑M2/37‑71 (MQ=255) tggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggct < 1:784596‑M2/69‑33 (MQ=255) ggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggaca < 1:1091740‑M2/61‑26 (MQ=255) aggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGc > 1:267746‑M2/33‑71 (MQ=255) cGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaata > 1:2738115‑M2/1‑34 (MQ=255) cAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatag < 1:3555333‑M2/48‑20 (MQ=255) tgtccatattacgtgggtaggatcaACTGGCCCaa < 1:2844104‑M2/10‑1 (MQ=255) tgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACg < 1:3122560‑M2/19‑1 (MQ=255) gtccatattacgtgggtaggatcaACTGGCCCAAg > 1:4569892‑M2/25‑35 (MQ=255) gtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACg < 1:112518‑M2/19‑1 (MQ=255) tccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgt < 1:149018‑M2/33‑1 (MQ=255) tccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatacca < 1:124337‑M2/48‑1 (MQ=255) tccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatacca < 1:1249464‑M2/48‑1 (MQ=255) tccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatacca < 1:4307609‑M2/48‑1 (MQ=255) ccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGAt > 1:1637852‑M2/23‑43 (MQ=255) ccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgt < 1:4366244‑M2/33‑1 (MQ=255) gCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:4660863‑M2/71‑48 (MQ=255) gCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:3126352‑M2/71‑48 (MQ=255) gCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtga < 1:235789‑M2/62‑39 (MQ=255) gCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtga < 1:544532‑M2/62‑39 (MQ=255) gCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtga < 1:1930513‑M2/62‑39 (MQ=255) gCTATAGCATCAGTGTTAATCACTtgatcttaccca < 1:4177262‑M2/36‑13 (MQ=255) cTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:760354‑M2/1‑23 (MQ=255) cTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:660049‑M2/1‑23 (MQ=255) atattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGGCTGGAAGGTGTCAGCTAcataccatac < 1:338704‑M2/51‑1 (MQ=255) tattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCt < 1:4037144‑M2/26‑1 (MQ=255) tattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcataccatac < 1:2237036‑M2/51‑1 (MQ=255) ttacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAgg > 1:1988944‑M2/18‑49 (MQ=255) ttacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTa < 1:129801‑M2/41‑1 (MQ=255) ttacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACa > 1:3467338‑M2/18‑69 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgtggctaagtgagtaaactctcag > 1:1125216‑M2/1‑20 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:2904961‑M2/1‑20 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggct > 1:3474439‑M2/1‑20 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatag > 1:2098045‑M2/1‑20 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatag > 1:4497345‑M2/1‑20 (MQ=255) aGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggct > 1:1597758‑M2/1‑19 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:3644570‑M2/1‑18 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaacagtggacacgcggctaagtgagtaaactctcagtca > 1:2261133‑M2/1‑18 (MQ=255) acgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACaaa > 1:2426004‑M2/16‑69 (MQ=255) acgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACa > 1:505491‑M2/16‑67 (MQ=255) cATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1831677‑M2/1‑17 (MQ=255) gtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGata < 1:2017602‑M2/58‑1 (MQ=255) aTCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:2365839‑M2/1‑16 (MQ=255) tCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaac > 1:249446‑M2/1‑15 (MQ=255) aGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:3617207‑M2/71‑59 (MQ=255) aGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactc < 1:3147336‑M2/59‑47 (MQ=255) tgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga < 1:3024071‑M2/71‑61 (MQ=255) tgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga < 1:4633599‑M2/71‑61 (MQ=255) tgtTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga > 1:4116626‑M2/1‑11 (MQ=255) tgtTAATCACTtgatcttacccagcaatagtggacacgcggctaa > 1:581084‑M2/1‑11 (MQ=255) taggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgtt < 1:2200160‑M2/63‑1 (MQ=255) aggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgtt < 1:2176497‑M2/63‑1 (MQ=255) ggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACaaa < 1:949276‑M2/54‑1 (MQ=255) ggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgttg > 1:1697205‑M2/7‑70 (MQ=255) atcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtg > 1:630150‑M2/5‑71 (MQ=255) aaTCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1982547‑M2/71‑65 (MQ=255) tcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtg > 1:1720867‑M2/4‑70 (MQ=255) caACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatac > 1:3524498‑M2/3‑48 (MQ=255) caACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatac > 1:746276‑M2/3‑48 (MQ=255) aCTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:2731454‑M2/70‑68 (MQ=255) cTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:3150391‑M2/58‑57 (MQ=255) tGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgttg > 1:3396328/1‑62 (MQ=255) | ATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATG > W3110S.gb/576844‑576981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |