| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 44 (0.870) | 42 (0.900) | 29/94 | NT | 55.5% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 27 (0.580) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
CACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGCC > W3110S.gb/4125272‑4125410 | cacaCGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAat > 1:2694561‑M2/1‑69 (MQ=255) acacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAatt < 1:825317‑M2/71‑4 (MQ=255) cacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattc > 1:3321511‑M2/1‑67 (MQ=255) cacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattc < 1:2031644‑M2/71‑5 (MQ=255) acGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattc < 1:2290945‑M2/70‑5 (MQ=255) cGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAaata > 1:1551231/1‑65 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagc < 1:118708‑M2/71‑8 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcag < 1:2365052‑M2/70‑7 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATtct > 1:4676805/1‑69 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCa < 1:2986532/71‑1 (MQ=255) aaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCCCCCGCGAAAAAATAATTCTCAAg > 1:2332445/1‑70 (MQ=255) aaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagcta > 1:2790980‑M2/1‑61 (MQ=255) aaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagct < 1:2015441‑M2/69‑9 (MQ=255) aaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATtctc < 1:1275147/67‑1 (MQ=255) aaaaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAg > 1:2351383/1‑70 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:199338‑M2/1‑59 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:3194215‑M2/1‑59 (MQ=255) aGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga < 1:1275191‑M2/70‑13 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAa > 1:687606‑M2/1‑53 (MQ=255) aCGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgca < 1:1288785‑M2/71‑20 (MQ=255) cGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAa > 1:800157‑M2/1‑51 (MQ=255) gAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaa < 1:2442001‑M2/60‑11 (MQ=255) aaCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGa < 1:4128763/71‑1 (MQ=255) aCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactg < 1:364187‑M2/70‑23 (MQ=255) gctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa > 1:1351874/1‑69 (MQ=255) ctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAg < 1:4374234/71‑1 (MQ=255) tgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggatta > 1:3349780‑M2/1‑43 (MQ=255) tgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattca > 1:3264589‑M2/1‑43 (MQ=255) ggCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcac < 1:3071075‑M2/62‑21 (MQ=255) ttGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa > 1:3512154/1‑62 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAaata > 1:2078318/1‑37 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt < 1:2955314/69‑1 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGACGAAACAGTAttt < 1:971450/69‑1 (MQ=255) gTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa < 1:2404316/70‑1 (MQ=255) gTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAt > 1:1219123/1‑71 (MQ=255) tACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAg > 1:995393/1‑44 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacg > 1:3019622‑M2/1‑33 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaac > 1:1473881‑M2/1‑33 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaac > 1:4293532‑M2/1‑33 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaac > 1:654836‑M2/1‑33 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactgga > 1:318334‑M2/1‑33 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcact < 1:3877076‑M2/54‑22 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacac < 1:3823513‑M2/48‑16 (MQ=255) cAAACCAGGAGTCGTTTCACCCGCGAAAAAATAat > 1:371580‑M2/1‑33 (MQ=255) aaaCCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggat > 1:2592933‑M2/1‑32 (MQ=255) aaCCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgat < 1:1715286‑M2/71‑41 (MQ=255) aaCCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgca > 1:2389415‑M2/1‑31 (MQ=255) aaCCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgca > 1:4416340‑M2/1‑31 (MQ=255) aaCCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGccc > 1:2895455/1‑71 (MQ=255) cAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattga > 1:754097‑M2/1‑28 (MQ=255) cAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagaca < 1:2065399‑M2/42‑15 (MQ=255) aGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactgga > 1:363159‑M2/1‑27 (MQ=255) aGGAGTCGTTTCACCCGCGAAAAAATAaatcagctaagacactgcactggattaagatgaaaac < 1:1153308‑M2/64‑38 (MQ=255) aGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAg > 1:2081618/1‑36 (MQ=255) aGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCg < 1:3570925/44‑1 (MQ=255) aGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCg < 1:2507235/44‑1 (MQ=255) ggAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaag < 1:2004901‑M2/71‑46 (MQ=255) tCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactg > 1:4585446‑M2/1‑22 (MQ=255) tCGTTTCACCCGCGAAAAAATAattcagctaagac > 1:1931826‑M2/1‑22 (MQ=255) cGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCt > 1:3874635/1‑71 (MQ=255) cGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCt > 1:2971149/1‑71 (MQ=255) gTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:3907917/1‑54 (MQ=255) tttCACCCGCGAAAAAATAattcagctaagacactgca > 1:3394921‑M2/1‑19 (MQ=255) ttCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:4223701‑M2/71‑54 (MQ=255) ttCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:638716‑M2/71‑54 (MQ=255) ttCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTc > 1:3685194/1‑71 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:601208‑M2/70‑54 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattga < 1:1959921‑M2/60‑44 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:3322160/1‑51 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCg > 1:368292/1‑71 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCg > 1:2841535/1‑71 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCg > 1:1855679/1‑71 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCg > 1:4239800/1‑71 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCg > 1:4337806/1‑71 (MQ=255) cACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatg > 1:3063073‑M2/1‑16 (MQ=255) aCCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttg > 1:639990‑M2/1‑15 (MQ=255) aCCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttg > 1:4685468‑M2/1‑15 (MQ=255) aCCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttg > 1:4479777‑M2/1‑15 (MQ=255) ccGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattg > 1:2628616‑M2/1‑13 (MQ=255) cgcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:1602757/1‑46 (MQ=255) gcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactc < 1:2630184‑M2/70‑60 (MQ=255) gcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttga > 1:1536405‑M2/1‑11 (MQ=255) gcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTg > 1:3260640/1‑69 (MQ=255) gcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGAt > 1:674848/1‑71 (MQ=255) gAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactcta < 1:2336084‑M2/70‑62 (MQ=255) gAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:2171840‑M2/62‑54 (MQ=255) gAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGAttt < 1:3428593/71‑1 (MQ=255) aaaaaTAattcagctaagacactgcactggattaagatgaaaacga < 1:1939097‑M2/46‑40 (MQ=255) aaaaaTAattcagctaagacactgcactggattaaga < 1:3223784‑M2/37‑31 (MQ=255) aaaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAtt > 1:1998122/1‑43 (MQ=255) aaaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTg > 1:2144679/1‑39 (MQ=255) aaaTAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCGGa > 1:426922/1‑64 (MQ=255) aataattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacagcta > 1:3459064‑M2/1‑4 (MQ=255) taattcagctaagactctgcactggattaagatgaaaacgattgaagttgatg > 1:3290598‑M2/1‑2 (MQ=255) taattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacagctata > 1:2685949‑M2/1‑2 (MQ=255) taatTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:2215073/1‑36 (MQ=255) aattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacagctatat < 1:3421609‑M2/71‑71 (MQ=255) | CACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGCC > W3110S.gb/4125272‑4125410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |