| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1088636 | 46 (0.900) | 3 (0.070) | 3/92 | NT | 7.3% | coding (1644/2019 nt) | ycdR | predicted enzyme associated with biofilm formation |
| ? | W3110S.gb | = 1088653 | 35 (0.760) | coding (1627/2019 nt) | ycdR | predicted enzyme associated with biofilm formation | |||||
GTCATAGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCTTTTACGCGCGCACTAAGTTC > W3110S.gb/1088585‑1088722 | gTCATAGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCgg > 1:1222240/1‑69 (MQ=255)gTCATAGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGaa > 1:959664‑M2/1‑69 (MQ=255)gTCATAGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGaa > 1:424231‑M2/1‑69 (MQ=255)gTCATAGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGaa > 1:1263924‑M2/1‑69 (MQ=255)gTCATAGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGa > 1:1323069‑M2/1‑69 (MQ=255) cATAGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGaagt < 1:2444566‑M2/71‑5 (MQ=255) aGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGc > 1:1405731/1‑70 (MQ=255) aGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGc > 1:4202443/1‑70 (MQ=255) aGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGc > 1:1925779/1‑70 (MQ=255) ggAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATAtt < 1:3250185/70‑1 (MQ=255) aaTCAGCATAATTATGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGt > 1:3288440/1‑71 (MQ=255) tCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGc < 1:388293/71‑1 (MQ=255) cAGCATAAATCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTg > 1:331452/1‑69 (MQ=255) gCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCaaaaa < 1:2032269/58‑1 (MQ=255) gCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCaaaaa < 1:2037560/58‑1 (MQ=255) cATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAata > 1:4555961/1‑59 (MQ=255) aTAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGttt > 1:89017/1‑71 (MQ=255) tAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTTTATTACCgg < 1:3651205/44‑1 (MQ=255) aTTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTaa < 1:680367/71‑1 (MQ=255) ttCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTaa > 1:1572385/1‑70 (MQ=255) ttCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAat < 1:1383434/71‑1 (MQ=255) cTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAatat > 1:1125512/1‑71 (MQ=255) cTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAata < 1:873871/70‑1 (MQ=255) tgaaaaCCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATAtg < 1:1992023/66‑1 (MQ=255) cAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAata > 1:1555945/1‑47 (MQ=255) cAAACCAGGCTTAACATTCAGGTTGTAATACCGGAAg > 1:696307/1‑37 (MQ=25) aaCCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGAcc > 1:2938369/1‑71 (MQ=255) aaCCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGAcc < 1:4141647/71‑1 (MQ=255) cAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACcgcg < 1:2104538/71‑1 (MQ=255) cAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTGCGTGCAGTTTTAATATGTGGACcgcg < 1:2110029/71‑1 (MQ=255) cTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTaa < 1:4323891/54‑1 (MQ=255) ttCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTa < 1:2793634/52‑1 (MQ=255) aCTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGa > 1:4158893/1‑58 (MQ=255) aCTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCtt < 1:700746/71‑1 (MQ=255) cTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCttt < 1:2287493/71‑1 (MQ=255) cTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCttt < 1:4619131/71‑1 (MQ=255) tttCAGGTTGTATTACCGGaagtgaagcctggtttgcacagaattatgct > 1:4584017‑M2/1‑19 (MQ=255) ttCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCTTTTa > 1:3409611/1‑71 (MQ=255) tCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATAtg > 1:2000280/1‑50 (MQ=255) tCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATg < 1:4522288/63‑1 (MQ=255) tCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCtttt < 1:3794889/69‑1 (MQ=255) tCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCTTTTa > 1:2046844/1‑70 (MQ=255) tCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCTTTTAc > 1:3750005/1‑71 (MQ=255) cAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGc < 1:1339427/64‑1 (MQ=255) gTATTACCGGaagtgaagcctggtttgcacagaattatgctgattt > 1:3072517‑M2/1‑10 (MQ=255) gTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCTTTTACGCGCGCa > 1:3631894/1‑71 (MQ=255) tATTACCGGAAGTGCAAAAATATTTCGTGCAGtttt < 1:4315525/36‑1 (MQ=255) aTTACCGGaagtgaagcctggtttgcacagaattatgctgatttcc < 1:1958250‑M2/46‑39 (MQ=255) ttACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCTTTTACGCGCGCACt > 1:3920356/1‑70 (MQ=255) aCCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCTTTTACGCGCGCACTAAg > 1:4470814/1‑71 (MQ=255) gAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCTTTTACGCGCGCACTAAGTTc > 1:3492549/1‑70 (MQ=255) | GTCATAGCTTTTTAGGAAATCAGCATAATTCTGTGCAAACCAGGCTTCACTTTCAGGTTGTATTACCGGAAGTGCAAAAATATTTCGTGCAGTTTTAATATGTGGACCGCGAATGGCTTTTACGCGCGCACTAAGTTC > W3110S.gb/1088585‑1088722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |