| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 31 (0.610) | 5 (0.120) | 5/84 | NT | 14.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 33 (0.790) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACA > W3110S.gb/4547599‑4547737 | aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAt > 1:1801590‑M2/1‑70 (MQ=255) cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:2309960‑M2/1‑69 (MQ=255) tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcc < 1:2127635‑M2/71‑6 (MQ=255) gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccc < 1:2780402‑M2/70‑7 (MQ=255) gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccc < 1:1379343‑M2/70‑7 (MQ=255) tatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtgg > 1:4032931‑M2/1‑61 (MQ=255) tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:2732729/1‑58 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:3463866/70‑1 (MQ=255) aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaa > 1:3366255‑M2/1‑56 (MQ=255) gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtc > 1:1497973‑M2/1‑55 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:137683/1‑51 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt > 1:116974/1‑71 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt > 1:3347292/1‑71 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt > 1:920510/1‑71 (MQ=255) caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt < 1:1209538/71‑1 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:2078330/71‑1 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaa > 1:3945326‑M2/1‑47 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt > 1:3831017/1‑67 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg < 1:161682/71‑1 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg > 1:970069/1‑71 (MQ=255) aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg < 1:1731568/70‑1 (MQ=255) gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaa > 1:1359401‑M2/1‑40 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttt < 1:3910548‑M2/71‑33 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:3253055/62‑1 (MQ=255) aaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttt > 1:993679‑M2/1‑38 (MQ=255) aaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:929757/51‑1 (MQ=255) aaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAc > 1:1367565/1‑71 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtgtcccc < 1:2853753‑M2/44‑8 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa > 1:2996733/1‑54 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt > 1:4560801/1‑71 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt > 1:2136370/1‑71 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACt > 1:2940880/1‑71 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:4417881/1‑51 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtg > 1:1741733/1‑71 (MQ=255) ttGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg > 1:281307/1‑69 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:2453819/49‑1 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:2459360/49‑1 (MQ=255) aTGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt < 1:2091697/44‑1 (MQ=255) aTGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa < 1:3384998/71‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt < 1:1525820/43‑1 (MQ=255) tGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg > 1:2387478/1‑71 (MQ=255) ttCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttt > 1:2924647‑M2/1‑18 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa > 1:2563121/1‑70 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:1678157/69‑1 (MQ=255) ccTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttttta < 1:4051556‑M2/51‑36 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg > 1:217184/1‑53 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa < 1:1732585/70‑1 (MQ=255) ctctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:2665926/1‑70 (MQ=255) tctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa < 1:964032/45‑1 (MQ=255) tATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaa < 1:3049743‑M2/48‑37 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGttt < 1:1349349/71‑1 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt < 1:4244966/70‑1 (MQ=255) gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt < 1:3774796/69‑1 (MQ=255) aaaatggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctct < 1:1752217‑M2/71‑68 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:4249001/45‑1 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTAAAAc > 1:2442592/1‑59 (MQ=255) aaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:4443683/1‑70 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCa > 1:4347065/1‑41 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:1194463/71‑1 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca > 1:1437011/1‑70 (MQ=255) | ACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACA > W3110S.gb/4547599‑4547737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |