Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,085 T→C 35.9% S233S (AGT→AGC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,0850TC35.9% 106.5 / 115.8 108S233S (AGT→AGCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (28/41);  new base C (18/20);  total (47/61)
Fisher's exact test for biased strand distribution p-value = 5.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

Only 100 of 113 total aligned reads displayed.

TCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGA  >  W3110S.gb/71016‑71153
                                                                     |                                                                    
tCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTc                                                                     <  1:2767534/71‑1 (MQ=255)
   gTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGt                                                                      >  1:709087/1‑67 (MQ=255)
   gTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGt                                                                      >  1:1292742/1‑67 (MQ=255)
      acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                <  1:2250602/70‑1 (MQ=255)
      acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                <  1:3603684/70‑1 (MQ=255)
      acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGa                                                               <  1:1800215/71‑1 (MQ=255)
        aTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                               <  1:2327603/69‑1 (MQ=255)
        aTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                             <  1:3434443/71‑1 (MQ=255)
         tCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAg                                                                   >  1:866653/1‑64 (MQ=255)
         tCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgc                                                            >  1:3545592/1‑71 (MQ=255)
          cTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgct                                                           >  1:2257815/1‑71 (MQ=255)
          cTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgct                                                           >  1:1769176/1‑71 (MQ=255)
             ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                                        >  1:4204424/1‑71 (MQ=255)
              tCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctgct                                                        <  1:762232/70‑1 (MQ=255)
               ccGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCttt                                                      >  1:3234357/1‑71 (MQ=255)
               ccGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtt                                                       <  1:4310214/70‑1 (MQ=255)
                cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtttt                                                     <  1:4506225/71‑1 (MQ=255)
                cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtttt                                                     <  1:102778/71‑1 (MQ=255)
                 gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                    <  1:220996/71‑1 (MQ=255)
                 gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTg                                                    <  1:3014477/71‑1 (MQ=255)
                  ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGa                                                   <  1:2165872/71‑1 (MQ=255)
                  ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGa                                                   <  1:1409395/71‑1 (MQ=255)
                  ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtttt                                                     >  1:1622775/1‑69 (MQ=255)
                  ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtt                                                       >  1:2125372/1‑67 (MQ=255)
                   cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                  <  1:2024390/71‑1 (MQ=255)
                   cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                  <  1:4058644/71‑1 (MQ=255)
                   cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAg                                                  >  1:4651632/1‑71 (MQ=255)
                   cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAg                                                  <  1:4697015/71‑1 (MQ=255)
                    agcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGc                                                 <  1:1632781/71‑1 (MQ=255)
                    agcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAg                                                  >  1:4004229/1‑70 (MQ=255)
                     gcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                             <  1:340039/58‑1 (MQ=255)
                        gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtt                                                       <  1:2412206/61‑1 (MQ=255)
                        gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTa                                             <  1:3312942/71‑1 (MQ=255)
                         ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGc                                                                 >  1:4468007/1‑50 (MQ=255)
                         ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctg                                                          <  1:1761337/57‑1 (MQ=255)
                         ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGa                                                   <  1:555019/64‑1 (MQ=255)
                         ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAc                                            <  1:1176484/71‑1 (MQ=255)
                          tAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCaccacc                                           >  1:2756044/1‑71 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                  >  1:3399968/1‑63 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                  >  1:1402697/1‑63 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                          >  1:1836006/1‑71 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                          >  1:3949372/1‑71 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGAGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                  >  1:2120508/1‑63 (MQ=255)
                            gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:2832042/71‑1 (MQ=255)
                            gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                          <  1:2625250/70‑1 (MQ=255)
                             ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCgg                                        <  1:721503/71‑1 (MQ=255)
                             ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCgg                                        <  1:2121579/71‑1 (MQ=255)
                             ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                         >  1:51880/1‑70 (MQ=255)
                               aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGTTTTTGAGCACCACCCGGAt                                      >  1:1857821/1‑71 (MQ=255)
                               aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                                      <  1:154906/71‑1 (MQ=255)
                               aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtt                                                       <  1:2435970/54‑1 (MQ=255)
                                ttAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgc                                                            <  1:2651883/48‑1 (MQ=255)
                                 tAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGc                                    >  1:3181344/1‑71 (MQ=255)
                                 tAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGc                                    >  1:3806726/1‑71 (MQ=255)
                                  aGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGc                                    >  1:3189060/1‑70 (MQ=255)
                                   gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGTATGCCt                                  <  1:612051/71‑1 (MQ=255)
                                   gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                  <  1:4514386/71‑1 (MQ=255)
                                    cGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTa                                 <  1:1799830/71‑1 (MQ=255)
                                     gTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                    >  1:1673865/1‑51 (MQ=255)
                                      tCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctgc                                                         <  1:4274428/45‑1 (MQ=255)
                                      tCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                          <  1:1579450/60‑1 (MQ=255)
                                      tCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATc                               >  1:3197556/1‑71 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGa                                                   >  1:2353546/1‑49 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         >  1:634244/1‑59 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                             >  1:3900926/1‑71 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGa                                                   >  1:635932/1‑49 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGc                             >  1:1991400/1‑71 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGc                             >  1:2056668/1‑71 (MQ=255)
                                         tAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCtttt                                                     <  1:1241244/46‑1 (MQ=255)
                                          aaGCTGGCGCGAGGACCAACGTATCAGACAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                           >  1:769806/1‑71 (MQ=255)
                                                gcgcGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGGCACCgtcg                     <  1:1335200/71‑1 (MQ=255)
                                                gcgcGAGGACCAACGCATTAGTCAGGCGAATCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgt                       <  1:1045546/69‑1 (MQ=255)
                                                  gcgAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcggt                   >  1:3673001/1‑71 (MQ=255)
                                                    gAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcggtcg                 >  1:832516/1‑71 (MQ=255)
                                                     aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                <  1:1795572/71‑1 (MQ=255)
                                                     aGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGc                <  1:4226074/71‑1 (MQ=255)
                                                      ggACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCa               <  1:3268560/71‑1 (MQ=255)
                                                        aCCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                         <  1:3659828/43‑1 (MQ=255)
                                                         ccAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATg            <  1:2048242/71‑1 (MQ=255)
                                                         ccAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATg            >  1:3113102/1‑71 (MQ=255)
                                                         ccAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAAt             <  1:274224/70‑1 (MQ=255)
                                                         ccAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATg            <  1:3826036/71‑1 (MQ=255)
                                                         ccAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATg            <  1:3697138/71‑1 (MQ=255)
                                                         ccAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATg            <  1:1243392/71‑1 (MQ=255)
                                                         ccAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATg            <  1:709233/71‑1 (MQ=255)
                                                          cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt           <  1:126242/71‑1 (MQ=255)
                                                          cAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt           <  1:590604/71‑1 (MQ=255)
                                                           aaCGCATTAATCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGtt          <  1:1455851/71‑1 (MQ=255)
                                                            aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgtcggt                   >  1:3208432/1‑61 (MQ=255)
                                                            aCGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg         >  1:3432828/1‑71 (MQ=255)
                                                            aCGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg         >  1:4335984/1‑71 (MQ=255)
                                                            aCGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg         >  1:2639316/1‑71 (MQ=255)
                                                               cATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtt      >  1:631695/1‑71 (MQ=255)
                                                               cATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtt      <  1:3243051/71‑1 (MQ=255)
                                                                 ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGc                                    <  1:682317/39‑1 (MQ=255)
                                                                 ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGc                                    <  1:3661476/39‑1 (MQ=255)
                                                                 ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt    <  1:3288778/71‑1 (MQ=255)
                                                                   aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTAt                                >  1:4138205/1‑41 (MQ=255)
                                                                   aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGa  >  1:2088418/1‑71 (MQ=255)
                                                                     tCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTg   <  1:2475274/68‑1 (MQ=255)
                                                                     |                                                                    
TCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGA  >  W3110S.gb/71016‑71153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: