Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,109 T→C 26.9% T241T (ACT→ACC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,1090TC26.9% 173.6 / 78.8 104T241T (ACT→ACCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (33/43);  new base C (13/15);  total (46/58)
Fisher's exact test for biased strand distribution p-value = 8.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 108 total aligned reads displayed.

GTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTTCTCGC  >  W3110S.gb/71040‑71173
                                                                     |                                                                
gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTa                                                                 <  1:3312942/71‑1 (MQ=255)
 ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAc                                                                <  1:1176484/71‑1 (MQ=255)
  tAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCaccacc                                                               >  1:2756044/1‑71 (MQ=255)
   aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                                              >  1:1836006/1‑71 (MQ=255)
   aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                                              >  1:3949372/1‑71 (MQ=255)
    gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                                             <  1:2832042/71‑1 (MQ=255)
    gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                                              <  1:2625250/70‑1 (MQ=255)
     ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCgg                                                            <  1:2121579/71‑1 (MQ=255)
     ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCgg                                                            <  1:721503/71‑1 (MQ=255)
     ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                                             >  1:51880/1‑70 (MQ=255)
       aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGTTTTTGAGCACCACCCGGAt                                                          >  1:1857821/1‑71 (MQ=255)
       aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                                                          <  1:154906/71‑1 (MQ=255)
         tAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGc                                                        >  1:3181344/1‑71 (MQ=255)
         tAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGc                                                        >  1:3806726/1‑71 (MQ=255)
          aGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGc                                                        >  1:3189060/1‑70 (MQ=255)
           gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGTATGCCt                                                      <  1:612051/71‑1 (MQ=255)
           gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                                      <  1:4514386/71‑1 (MQ=255)
            cGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTa                                                     <  1:2155027/71‑1 (MQ=255)
            cGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTa                                                     <  1:1799830/71‑1 (MQ=255)
              tCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAccc                                                              <  1:1579450/60‑1 (MQ=255)
              tCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATc                                                   >  1:3197556/1‑71 (MQ=255)
                ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                                                 >  1:3900926/1‑71 (MQ=255)
                ttAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGc                                                 >  1:1991400/1‑71 (MQ=255)
                ttAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGc                                                 >  1:2056668/1‑71 (MQ=255)
                  aaGCTGGCGCGAGGACCAACGTATCAGACAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                                               >  1:769806/1‑71 (MQ=255)
                     cTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCg                                            >  1:2860018/1‑71 (MQ=255)
                        gcgcGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGGCACCgtcg                                         <  1:1335200/71‑1 (MQ=255)
                        gcgcGAGGACCAACGCATTAGTCAGGCGAATCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgt                                           <  1:1045546/69‑1 (MQ=255)
                          gcgAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcggt                                       >  1:3673001/1‑71 (MQ=255)
                            gAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcggtcg                                     >  1:832516/1‑71 (MQ=255)
                             aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                                    <  1:1795572/71‑1 (MQ=255)
                              ggACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCa                                   <  1:3268560/71‑1 (MQ=255)
                                aCCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                                             <  1:3659828/43‑1 (MQ=255)
                                 ccAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATg                                <  1:2048242/71‑1 (MQ=255)
                                 ccAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATg                                >  1:3113102/1‑71 (MQ=255)
                                 ccAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATg                                <  1:3697138/71‑1 (MQ=255)
                                 ccAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATg                                <  1:709233/71‑1 (MQ=255)
                                 ccAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATg                                <  1:3826036/71‑1 (MQ=255)
                                 ccAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATg                                <  1:1243392/71‑1 (MQ=255)
                                  cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               <  1:126242/71‑1 (MQ=255)
                                  cAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               <  1:590604/71‑1 (MQ=255)
                                  aaaCGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               >  1:3872174/2‑71 (MQ=255)
                                   aaCGCATTAATCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGtt                              <  1:1455851/71‑1 (MQ=255)
                                    aCGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg                             >  1:2639316/1‑71 (MQ=255)
                                    aCGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg                             >  1:3432828/1‑71 (MQ=255)
                                    aCGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg                             >  1:4335984/1‑71 (MQ=255)
                                       cATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtt                          >  1:631695/1‑71 (MQ=255)
                                       cATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtt                          <  1:3243051/71‑1 (MQ=255)
                                        aTTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGcc                                                >  1:4229523/1‑48 (MQ=255)
                                         ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGc                                                        <  1:682317/39‑1 (MQ=255)
                                         ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGc                                                        <  1:3661476/39‑1 (MQ=255)
                                         ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt                        <  1:3288778/71‑1 (MQ=255)
                                           aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTAt                                                    >  1:4138205/1‑41 (MQ=255)
                                           aGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               <  1:2022042/62‑1 (MQ=255)
                                             tCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTg                       <  1:2475274/68‑1 (MQ=255)
                                             ccAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACg                    <  1:1814915/70‑1 (MQ=255)
                                             ccAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACg                    <  1:1455772/70‑1 (MQ=255)
                                             ccAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACg                    <  1:3093501/70‑1 (MQ=255)
                                              cAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAAt                                 >  1:1791629/1‑57 (MQ=255)
                                               aGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGa                   <  1:3944687/70‑1 (MQ=255)
                                               aGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGa                   <  1:754313/70‑1 (MQ=255)
                                               aGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGa                   <  1:4027393/70‑1 (MQ=255)
                                                ggCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATc                 <  1:2657603/71‑1 (MQ=255)
                                                 gCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATc                 <  1:935716/70‑1 (MQ=255)
                                                  cGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGa                      >  1:4145941/1‑64 (MQ=255)
                                                  cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCAcc                                             >  1:633179/1‑41 (MQ=255)
                                                   gAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGcc                                                >  1:3791674/1‑37 (MQ=255)
                                                   gAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCaa               >  1:2361018/1‑70 (MQ=255)
                                                    aaGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGtt                              >  1:375839/1‑54 (MQ=255)
                                                     aGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAActc            <  1:3331191/71‑1 (MQ=255)
                                                      gctgctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCaa               >  1:206269/1‑67 (MQ=255)
                                                      gctgctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCaa               >  1:702541/1‑67 (MQ=255)
                                                      gctgctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAActct           <  1:864644/71‑1 (MQ=255)
                                                       ctgctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATc                 <  1:1105298/64‑1 (MQ=255)
                                                        tgctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTAt         >  1:721660/1‑71 (MQ=255)
                                                          ctTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTAt         <  1:3321726/69‑1 (MQ=255)
                                                          ctTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTg                       <  1:2631087/55‑1 (MQ=255)
                                                          ctTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGAc                     >  1:910882/1‑57 (MQ=255)
                                                           ttttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtt                          <  1:2779865/51‑1 (MQ=255)
                                                           ttttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtt                          <  1:2483694/51‑1 (MQ=255)
                                                           ttttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGt                           <  1:266737/50‑1 (MQ=255)
                                                           ttttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTtc      >  1:3546546/1‑71 (MQ=255)
                                                            tttGAGGACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTtc      >  1:602874/1‑70 (MQ=255)
                                                            tttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGc                                    <  1:3498096/40‑1 (MQ=255)
                                                            tttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGc                                    <  1:815978/40‑1 (MQ=255)
                                                            tttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGc                                    <  1:4248396/40‑1 (MQ=255)
                                                             ttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt                               <  1:3421232/44‑1 (MQ=255)
                                                             ttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGa                      >  1:4517114/1‑53 (MQ=255)
                                                             ttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGa                      >  1:2117688/1‑53 (MQ=255)
                                                             ttGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTtc      <  1:130167/69‑1 (MQ=255)
                                                             ttGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg                             >  1:4334090/1‑46 (MQ=255)
                                                              tGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATc                 <  1:1119264/57‑1 (MQ=255)
                                                              tGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATc                 <  1:3121487/57‑1 (MQ=255)
                                                               gAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTTCTcgc  >  1:1653677/1‑71 (MQ=255)
                                                                 gCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTTCTcgc  >  1:1190271/1‑69 (MQ=255)
                                                                 gCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTTCTcgc  >  1:2754826/1‑69 (MQ=255)
                                                                   aCTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGa                   <  1:2581010/50‑1 (MQ=255)
                                                                     tACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt                        <  1:3011405/43‑1 (MQ=255)
                                                                     tACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACg                    <  1:4641549/47‑1 (MQ=255)
                                                                     tACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACg                    <  1:2676032/47‑1 (MQ=255)
                                                                     |                                                                
GTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCAACTCTATTTCTCGC  >  W3110S.gb/71040‑71173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: