New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 225889 =NA (NA)4 (0.080) 4/88 NT NA noncoding (131/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb 225907 = NA (NA)noncoding (149/2904 nt) rrlH 23S ribosomal RNA

Only 100 of 120 total aligned reads displayed.

TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/225965‑225889
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacactATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  >  W3110S.gb/225907‑225975
                                                                                                                                                  
TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             <  1:1877134/71‑1
TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             <  1:1210970/71‑1
TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:1512274/1‑71
TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:2154069/1‑71
 ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:3723800/1‑70
 ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:3980547/1‑70
 ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:20126/1‑70
  CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA                                                                           <  1:4560166/71‑1
  CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA                                                                           >  1:1670233/1‑71
  CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC                                                                            >  1:2727925/1‑70
   TTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA                                                                           >  1:2648453/1‑70
    cttATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:3659984/4‑71
    TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:4667083/1‑71
    TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:4093884/1‑71
     AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:2141088/1‑71
     AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:556246/1‑71
     AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:1602484/1‑71
     AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:1324757/1‑71
     AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:1913064/1‑71
     AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:3307454/1‑71
     AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC                                                                          <  1:4672769/69‑1
     AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA                                                                           <  1:2497778/68‑1
     AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC                                                                            >  1:1982699/1‑67
      GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:680963/71‑1
      GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:1438909/71‑1
      GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       >  1:3334698/1‑71
      GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:1030809/71‑1
      GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       >  1:789718/1‑71
      GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        <  1:1122555/70‑1
      GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        <  1:2440588/70‑1
       ATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:3107217/70‑1
           TTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:2831689/1‑65
           TTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:4491479/1‑60
              AGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:1383510/1‑57
               GTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:4196808/62‑1
                  aCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC                                                                          >  1:1428812/2‑56
                    CCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             <  1:2223828/51‑1
                     CCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:5240924/56‑1
                     CCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC                                                                          <  1:4048035/53‑1
                      CGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTTTCGACACACTATCAT                                                                  >  1:56825/1‑60
                      CGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:1115951/1‑53
                       GGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC                                                                            >  1:3740674/1‑49
                        GTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:440267/53‑1
                        GTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:1312371/53‑1
                           CGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       <  1:2585703/50‑1
                               TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        >  1:2831464/1‑45
                               TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC                                                                            >  1:1089461/1‑41
                               TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC                                                                            >  1:4008165/1‑41
                               TCATTAACCTATGGATTCAGTTAATGATACTGTGTCGAAAC                                                                            <  1:2757214/41‑1
                                CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:1449843/1‑39
                                 ATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:1411750/1‑38
                                 ATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             <  1:3096359/38‑1
                                    AACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        <  1:5266094/40‑1
                                    AACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:2264913/1‑35
                                    AACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                                                             >  1:804066/1‑35
                                       CTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT                                                                       >  1:5349915/1‑38
                                        TATGGATTCAGTTAATGATAGTGTGTCGAAACACA                                                                         >  1:38527/1‑35
                                         ATGGATTCAGTTAATGATAGTGTGTCGAAACACAC                                                                        <  1:4295908/35‑1
                                                       TGATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAA                      >  1:1846546/1‑71
                                                           AGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA                       >  1:2332384/1‑66
                                                           AGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCG                                  >  1:2615519/1‑55
                                                                   GAAACACACTATCATTAACTGAATCCATAGGTTAA                                              >  1:2450119/1‑35
                                                                      ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAAC                                    >  1:2081240/1‑42
                                                                      ACACACTATCATTAACAGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCT                 >  1:1323472/1‑61
                                                                       CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGA      <  1:2866677/71‑1
                                                                       CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG       <  1:3550414/70‑1
                                                                       CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG       <  1:4917044/70‑1
                                                                       CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG       <  1:5373039/70‑1
                                                                        ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG     >  1:3426653/1‑71
                                                                        ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG     >  1:1955091/1‑71
                                                                        ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG     >  1:5179086/1‑71
                                                                        ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGT             >  1:4454992/1‑63
                                                                        ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAACTACCCCG       >  1:2327224/1‑69
                                                                        ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA                       >  1:3640861/1‑53
                                                                         CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGG    <  1:2475509/71‑1
                                                                         CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG     >  1:4897019/1‑70
                                                                         CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG     >  1:955733/1‑70
                                                                         CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCT                 <  1:427458/58‑1
                                                                         CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAA                      <  1:313425/53‑1
                                                                         CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA                       <  1:2394922/52‑1
                                                                          ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAG              <  1:2341315/60‑1
                                                                          ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCT                 <  1:2948987/57‑1
                                                                          ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGA                             <  1:1670522/45‑1
                                                                           CTATCATTAACTGAATCCATGGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  <  1:3825934/71‑1
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  <  1:1051973/71‑1
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  <  1:3845834/71‑1
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  <  1:894795/71‑1
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  <  1:1319399/71‑1
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGA   >  1:3447329/1‑70
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTA                >  1:3454869/1‑57
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACAT                   >  1:4090681/1‑54
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC                     >  1:3358980/1‑52
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC                     >  1:4006777/1‑52
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTG                         <  1:1884595/48‑1
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAA                            >  1:5081954/1‑45
                                                                           CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGG                                 <  1:3204441/40‑1
                                                                            TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  >  1:2837532/1‑70
                                                                            TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  >  1:3579713/1‑70
                                                                            TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAG              <  1:4569284/58‑1
                                                                            TATCATTAACTGAATCCATAGGTTAATGAGGCGAAC                                    >  1:1708635/1‑36
                                                                                                                                                  
TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/225965‑225889
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacactATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA  >  W3110S.gb/225907‑225975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.