New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 296831	58 (0.990)	4 (0.080)	4/88	NT	7.3%	coding (185/411 nt)	yagP	predicted transcriptional regulator
	?	W3110S.gb	= 296842	52 (1.030)					coding (174/411 nt)	yagP	predicted transcriptional regulator

GGCCTGAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/296759‑296831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagatTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCAG  <  W3110S.gb/296842‑296773                                                                                                                                                 GGCCTGAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCA                                                                           <  1:1212849/70‑1      GAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACG                                                                             <  1:4725428/63‑1      GAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACG                                                                             <  1:5091923/63‑1            TTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAA                                                               >  1:3002052/1‑71                      GCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCA                                                                           >  1:4342189/1‑49                        AATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGAT                                                                        <  1:2120702/50‑1                          TTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAG                                                                          <  1:1433016/46‑1                            GTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAATGATCTGC                                                       <  1:5124141/63‑1                                      CGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAATGATCTGC                                                       >  1:1229941/1‑53                                           GCAAGAGCCAGCCTCAACATCAGACGCAGATTACGACTAATGATCTGCGT                                                     >  1:5050244/1‑50                                                                   CGCAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGC         >  1:1297943/1‑70                                                                   CGCAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTT                                <  1:1185048/47‑1                                                                   CGCAGATTACGACTAATGATCTGCGTCTGATGTTGA                                           <  1:1952716/36‑1                                                                    GCAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCA       >  1:1304917/1‑71                                                                     CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCGGGCGGAGGAATAACAATTGCCAC      >  1:2817761/1‑71                                                                     CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCAC      >  1:1948315/1‑71                                                                     CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCAC      >  1:5240560/1‑71                                                                     CAGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATT           >  1:4672979/1‑66                                                                      AGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACT     >  1:620213/1‑71                                                                      AGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACT     <  1:3647681/71‑1                                                                      AGATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACT     <  1:1575134/71‑1                                                                        ATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCA   <  1:3198407/71‑1                                                                        ATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAA             <  1:5190876/61‑1                                                                        ATTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAAC               <  1:3328433/59‑1                                                                         TTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCAG  <  1:4515596/71‑1                                                                         TTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCA   <  1:2944650/70‑1                                                                                                                                                 GGCCTGAAAGTTTCCTGAGTGGCAATTGTTATTCCTCCGCCGGCAAGAGCCAGCCTCAACATCAGACGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/296759‑296831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagatTACGACTAATGATCTGCGTCTGATGTTGAGGCTGGCTCTTGCCGGCGGAGGAATAACAATTGCCACTCAG  <  W3110S.gb/296842‑296773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.