New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2926734	48 (0.820)	4 (0.080)	4/88	NT	8.5%	intergenic (+406/‑151)	ygdH/sdaC	conserved hypothetical protein/predicted serine transporter
	?	W3110S.gb	= 2926743	45 (0.890)					intergenic (+415/‑142)	ygdH/sdaC	conserved hypothetical protein/predicted serine transporter

ACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2926660‑2926734 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatacaCACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC  <  W3110S.gb/2926743‑2926675                                                                                                                                                  ACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAG                                                                            <  1:3585225/70‑1  CAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAG                                                                            <  1:1433752/69‑1    GAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATAC                                                                        <  1:389605/71‑1     AGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACA                                                                       >  1:3298633/1‑71            CGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACACACAAGT                                                                >  1:3240620/1‑71              TTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATAC                                                                        <  1:2716368/61‑1                     AATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGA                                                                           <  1:4361710/51‑1                     AATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGA                                                                           <  1:3346523/51‑1                               CCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACACACAAGTTATGTATCT                                                       >  1:972168/1‑61                               CCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGA                                                                           <  1:1036252/41‑1                                   GTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACACACAAGTTATGTAT                                                         >  1:1843028/1‑55                                                   GAGATCAAGATCACTGATAGATACACACAAGTTATGTATC                                                        >  1:4974322/1‑40                                                                     AGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATT       <  1:5363531/71‑1                                                                     AGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAA               <  1:4691013/63‑1                                                                      GATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTA      <  1:1348141/71‑1                                                                       ATACACACAAGATATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTAT     >  1:2123846/1‑71                                                                         ACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCC   >  1:3632423/1‑71                                                                         ACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGAT        <  1:1222617/66‑1                                                                          CACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC  <  1:1524863/71‑1                                                                          CACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC  <  1:4418972/71‑1                                                                          CACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCC   >  1:4886671/1‑70                                                                           ACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC  >  1:1159183/1‑70                                                                                                                                                  ACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2926660‑2926734 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatacaCACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTATCCC  <  W3110S.gb/2926743‑2926675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.