New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 357451658 (0.990)5 (0.100) 5/90 NT 8.3% intergenic (‑82/+20) yihN/yihM predicted transporter/predicted sugar phosphate isomerase
?W3110S.gb = 3574523 60 (1.160)intergenic (‑89/+13) yihN/yihM predicted transporter/predicted sugar phosphate isomerase

CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3574442‑3574516
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaactCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTA  <  W3110S.gb/3574523‑3574455
                                                                                                                                                
CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATT                                                                           <  1:2805677/71‑1
CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTAT                                                                            >  1:1113025/1‑70
CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTAT                                                                            >  1:3392961/1‑70
 CTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTA                                                                          <  1:930765/71‑1
 CTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTA                                                                          <  1:4542008/71‑1
 CTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATT                                                                           >  1:4253076/1‑70
  TAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAA                                                                         >  1:5331646/1‑71
  TAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGCTTTATTAA                                                                         >  1:4243793/1‑71
   AAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAAC                                                                        >  1:4461723/1‑71
   AAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCAACCATTCATATGGAATGGTTTTATTAAC                                                                        >  1:4899088/1‑71
    AGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACT                                                                       >  1:5276768/1‑71
    AGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACT                                                                       <  1:4581350/71‑1
          TTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATT                                                                           >  1:4824250/1‑61
             TAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACTCATACG                                                                 >  1:2653689/1‑68
             TAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTAT                                                                            >  1:1419708/1‑57
              AAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAA                                                                         >  1:2978755/1‑59
              AAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTA                                                                          >  1:318877/1‑58
                AATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACTCATACGCAGTTA                                                           <  1:4514511/71‑1
                         TTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTAT                                                                            <  1:1427490/45‑1
                          TTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAA                                                                         >  1:3414700/1‑47
                                GCAATAAGATACCGACCATTCATATTGAATGGTTTTATTAACTCATACGCAGTTAAT                                                         <  1:3434586/57‑1
                                                  TTCATATGGAATGGTTTTTTTAACTCATACGCAGTTAAT                                                         >  1:4249595/1‑39
                                                    CATATGAATGGTTTTATTAACTCATACGCAGTTAA                                                          <  1:1983161/35‑1
                                                                     TTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGA       <  1:4358117/70‑1
                                                                     TTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAG          >  1:601356/1‑67
                                                                     TTAACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTA                              >  1:2912592/1‑47
                                                                        ACTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTT   <  1:774956/71‑1
                                                                         CTCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTA  <  1:1613970/71‑1
                                                                          TCATACGCAGTTAATAAAACCATTCCATATGAATGGTC                                  <  1:304129/38‑1
                                                                                                                                                
CCTAAGCGATTTTTAAAATCACTGTTTTAAAGGCAATAAGATACCGACCATTCATATGGAATGGTTTTATTAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3574442‑3574516
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaactCATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTA  <  W3110S.gb/3574523‑3574455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.