| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 64 (1.090) | 29 (0.630) +CGCGTACAACT |
23/80 | NT | 35.4% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 71 (1.210) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 129 total aligned reads displayed.
CCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTT > W3110S.gb/69991‑70131 | ccACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccat > 1:4310527/1‑71 (MQ=255)agcgagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgt < 1:4864054‑M1/1‑1 (MQ=255) gcgagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTc > 1:4098057‑M1/70‑71 (MQ=255) gagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTcc < 1:2716830‑M1/3‑1 (MQ=255) ccGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccatcc > 1:1193557/1‑70 (MQ=255) agaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCa < 1:4700533‑M1/4‑1 (MQ=255) gCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaa > 1:597502/1‑70 (MQ=255) ccAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaa > 1:4451295/1‑70 (MQ=255) ccAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaa > 1:2809356/1‑70 (MQ=255) cAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:2700984/71‑1 (MQ=255) acgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:2700579‑M1/64‑71 (MQ=255) cgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa < 1:2489894‑M1/8‑1 (MQ=255) aaaGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa > 1:4570889/1‑70 (MQ=255) aGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAAc < 1:4350147/71‑1 (MQ=255) aGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAAc < 1:712722/71‑1 (MQ=255) tctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACg < 1:2579649‑M1/12‑1 (MQ=255) tCGCACAGAATCACTGCCAAAATCGAGTCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:3744002/65‑1 (MQ=255) tCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:4429892/65‑1 (MQ=255) tCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACggg > 1:1627773/1‑71 (MQ=255) tCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCG‑TTCACTCCATCCaaaaa < 1:156410/64‑1 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTa < 1:4862287‑M1/16‑1 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTa < 1:1513961‑M1/16‑1 (MQ=255) gCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATACAAAAAAACggg < 1:4862891/69‑1 (MQ=255) cacaGAATCACTGCCAAAATCTAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTAt < 1:4612444/71‑1 (MQ=255) acaGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccat < 1:5030467/54‑1 (MQ=255) acaGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTAACTCCATCCAAAAAAACGGGTATg < 1:2766696/71‑1 (MQ=255) gtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATg < 1:4207084‑M1/18‑1 (MQ=255) aGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccatcc > 1:346901/1‑54 (MQ=255) aGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccatcc > 1:3784164/1‑54 (MQ=255) aGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATg > 1:734488/1‑69 (MQ=255) aGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATg > 1:745314/1‑69 (MQ=255) aaTCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACggg < 1:665407/63‑1 (MQ=255) aaTCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga < 1:2271326/71‑1 (MQ=255) aTCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGgaga > 1:2524222/1‑70 (MQ=255) tCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaaaa > 1:3043545/1‑57 (MQ=255) tCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa < 1:2201369/71‑1 (MQ=255) aCTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaaaa > 1:876217/1‑55 (MQ=255) aCTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACg > 1:509476/1‑57 (MQ=255) cagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAg > 1:56015‑M1/45‑71 (MQ=255) cTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAg < 1:4948957/71‑1 (MQ=255) ccAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaaaa > 1:2512800/1‑51 (MQ=255) cAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGga < 1:3779339/60‑1 (MQ=255) cAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTa > 1:285953/1‑69 (MQ=255) ctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTaga > 1:3867828‑M1/40‑70 (MQ=255) aaaaTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaaaa > 1:479920/1‑49 (MQ=255) aaaaTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaaaa < 1:1612511/49‑1 (MQ=255) aaaaTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAAc > 1:1095333/1‑50 (MQ=255) aaaaTCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTa > 1:1013595/1‑68 (MQ=255) aaaTTGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:1133988/46‑1 (MQ=255) catagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTagagag < 1:3346095‑M1/34‑1 (MQ=255) catagcggtcatttatgtcagactagagttgtacgcgTCCAAAAAAACGGGTa < 1:3987298‑M1/16‑1 (MQ=255) aaTCGAGGCCAATTGCAATCGCCATCGTTACACTCCATCCAAAAAAACGGGTAt > 1:3409823/1‑54 (MQ=255) atagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:4890698‑M1/37‑70 (MQ=255) atagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGt < 1:882200‑M1/35‑1 (MQ=255) atagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGt < 1:954174‑M1/35‑1 (MQ=255) tCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaa < 1:1892714/43‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTg < 1:3272280‑M1/37‑1 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTg > 1:1305440‑M1/34‑70 (MQ=255) ggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGgag < 1:1313052‑M1/21‑1 (MQ=255) gCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGa > 1:2062841/1‑70 (MQ=255) catttatgtcagacttgagttgtacgcgTCCaaaaa < 1:2567312‑M1/8‑1 (MQ=255) cAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTa < 1:2460772/57‑1 (MQ=255) atttatgtcagacttgagttgtacgcgTCCaaaaa < 1:3604344‑M1/8‑1 (MQ=255) atttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaa > 1:2767748‑M1/28‑70 (MQ=255) aaTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTag < 1:276583/57‑1 (MQ=255) aaTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaa > 1:1576013/1‑70 (MQ=255) tttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTag > 1:4181728‑M1/27‑56 (MQ=255) aTTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa < 1:4953907/71‑1 (MQ=255) ttGCAATCGCCATCGTTTCACTCCATCCaaaaaaa > 1:305975/1‑35 (MQ=255) ttGCAATCGCCATCGTTTCACTCCATCCaaaaaaa > 1:4751890/1‑35 (MQ=255) tGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa < 1:3141305/70‑1 (MQ=255) tgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATTGAGAAACAGTAGAGAGTTGCGATAAAAAGCg > 1:4537626‑M1/23‑71 (MQ=255) gtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCg < 1:4194525‑M1/49‑1 (MQ=255) tcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc > 1:2256380‑M1/21‑71 (MQ=255) tcagacttgagttgtacgcgTCCAAAAAAACGAGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc > 1:4623487‑M1/21‑71 (MQ=255) agacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg > 1:351243‑M1/19‑71 (MQ=255) gacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:4777639‑M1/18‑71 (MQ=255) gCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:3494145/1‑71 (MQ=255) gCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:2853882/71‑1 (MQ=255) cATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:5364692/1‑61 (MQ=255) cATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGt < 1:4321730/70‑1 (MQ=255) tCGTTTCACTCCATCCAAAAAAACGGGTATTGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc < 1:1088789/64‑1 (MQ=255) tCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg > 1:5051848/1‑70 (MQ=255) gagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:5153264‑M1/13‑46 (MQ=255) gagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg > 1:4378265‑M1/13‑70 (MQ=255) cGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:2541666/1‑71 (MQ=255) tttCACTCCATCCAAAAAAACGGGTATGGAGAAAc < 1:4691065/35‑1 (MQ=255) gttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATc < 1:3978445‑M1/61‑1 (MQ=255) gtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:2363982‑M1/32‑1 (MQ=255) gtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg > 1:1941561‑M1/8‑70 (MQ=255) cACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGc > 1:546117/1‑71 (MQ=255) aCTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt < 1:272632/71‑1 (MQ=255) cTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGt < 1:4471034/40‑1 (MQ=255) cTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt > 1:1555909/1‑70 (MQ=255) ccatccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAAt > 1:4402075/1‑71 (MQ=255) gTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:5018137‑M1/2‑71 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGt < 1:856069/55‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt < 1:4906299/71‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt < 1:1652115/71‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:3425809/1‑70 (MQ=255) | CCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTT > W3110S.gb/69991‑70131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |