New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | W3110S.gb | 270848 = | NA (NA) | 5 (0.090) | 4/92 | NT | NA | coding (1022/1152 nt) | insI | IS30 transposase |
? | W3110S.gb | 270875 = | NA (NA) | coding (1049/1152 nt) | insI | IS30 transposase |
GAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAG > W3110S.gb/270780‑270880 | gagTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACAt < 1:788648/71‑1 (MQ=34) gagTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACAt < 1:2678015/71‑1 (MQ=34) cTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGt < 1:3175164/68‑1 (MQ=35) ttGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTg > 1:2105706/1‑71 (MQ=34) ggCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGcc > 1:4020194/1‑71 (MQ=34) cAGCGGGTAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa < 1:1322935/71‑1 (MQ=21) cAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGccc > 1:3672219/1‑70 (MQ=35) cAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa < 1:2056844/71‑1 (MQ=34) cAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa < 1:950913/71‑1 (MQ=34) cAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCa < 1:3603960/71‑1 (MQ=34) aGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCaa < 1:2902229/71‑1 (MQ=34) cGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATATCTTGCCCAata > 1:2855632/1‑71 (MQ=21) ggggAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAata > 1:741588/1‑70 (MQ=35) ggAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATAc > 1:4654392/1‑71 (MQ=34) gAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGAc > 1:1791038/1‑52 (MQ=35) aCAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGAc > 1:1137/1‑50 (MQ=38) aCAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCa < 1:982594/71‑1 (MQ=34) agaATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCaa > 1:1185155/1‑56 (MQ=35) aTACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAatat < 1:2933075/56‑1 (MQ=33) tACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAg < 1:5081010/71‑1 (MQ=31) tACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGAAATGTCTTGCCCAATATTCTCAACATg < 1:4733023/65‑1 (MQ=255) | GAGTCCTTGGCAGCGGGGAACAAATGAGAATACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAG > W3110S.gb/270780‑270880 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |