| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 73 (1.250) | 36/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCG > W3110S.gb/274304‑274444 | atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg < 1:1565261/71‑1 (MQ=31) atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgggg > 1:3718861/1‑69 (MQ=17) atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGa < 1:5275305/70‑1 (MQ=35) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGa < 1:5281593/69‑1 (MQ=35) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg > 1:1038858/1‑70 (MQ=37) aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg < 1:5002054/65‑1 (MQ=31) aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCg > 1:3082924/1‑71 (MQ=40) ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATTTCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa > 1:2435152/1‑71 (MQ=255) ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa > 1:4519958/1‑71 (MQ=255) ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa < 1:3464733/71‑1 (MQ=255) cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt > 1:4511536/1‑71 (MQ=255) tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa > 1:127895/1‑69 (MQ=255) tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt > 1:1448189/1‑70 (MQ=255) tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt > 1:2615979/1‑70 (MQ=255) ttCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg < 1:3313483/69‑1 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt > 1:782148/1‑67 (MQ=255) gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCGCCTTCCGGAGGCGt < 1:1009562/58‑1 (MQ=255) cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcgg > 1:3812430/1‑70 (MQ=255) cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCt < 1:1066444/71‑1 (MQ=255) aGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg < 1:3221261/49‑1 (MQ=40) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1621517/1‑46 (MQ=35) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt < 1:1276268/55‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt < 1:3533014/71‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt > 1:5225029/1‑71 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtt < 1:4019192/70‑1 (MQ=255) aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtttt > 1:5221202/1‑71 (MQ=255) aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGCAGGCGTTATGAGCTGGCGGCCCtttt > 1:1085232/1‑71 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGa > 1:2664742/1‑44 (MQ=38) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg > 1:2587190/1‑41 (MQ=32) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:1454839/48‑1 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:142163/71‑1 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa > 1:1178848/1‑49 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt > 1:536654/1‑48 (MQ=255) aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCt < 1:1554313/52‑1 (MQ=255) aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATc < 1:2489320/70‑1 (MQ=255) aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATc < 1:5001194/70‑1 (MQ=255) aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGATGGCGGCCCTTTTTGTATCt > 1:1577317/1‑71 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTg < 1:1149584/71‑1 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTg < 1:287421/71‑1 (MQ=255) gATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCt > 1:2587180/1‑48 (MQ=255) gATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCt > 1:2758357/1‑48 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatta > 1:2117116/1‑71 (MQ=255) tctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattat > 1:438875/1‑71 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGATCTggc < 1:3821413/47‑1 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattatt > 1:3121117/1‑70 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:62758/1‑71 (MQ=255) tatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat < 1:3330562/63‑1 (MQ=255) aGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt < 1:542832/48‑1 (MQ=255) ggACTTGTTCGCACCTTCCGGAGGCGTTATGCGCTGGCGGCCCTTTTTGTa > 1:4719193/1‑51 (MQ=255) ggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt > 1:5031315/1‑46 (MQ=255) cTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGc < 1:4656537/71‑1 (MQ=255) tGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATcc < 1:2424749/61‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGc < 1:3541188/68‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGc < 1:658055/68‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTa < 1:4945581/70‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAt > 1:593755/1‑71 (MQ=255) ttCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAtt < 1:4671399/71‑1 (MQ=255) ccTTCCGGAGGCGTTATGAGCTGGCGGCCCttttt > 1:1285346/1‑35 (MQ=255) cTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt > 1:5269626/1‑38 (MQ=255) tCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCg > 1:247551/1‑71 (MQ=255) ccGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATc < 1:2676298/48‑1 (MQ=255) cGGAGGCGTTATGAGCTGGCGGCCCTTTTT‑TATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGgcg < 1:3631070/71‑1 (MQ=255) | ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCG > W3110S.gb/274304‑274444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |