| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1632877 | 52 (0.890) | 3 (0.060) | 3/94 | NT | 6.3% | coding (1123/1284 nt) | ydfJ | predicted transporter |
| ? | W3110S.gb | = 1632888 | 42 (0.780) | coding (1112/1284 nt) | ydfJ | predicted transporter | |||||
CTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGCGATAAGACCACCAAT > W3110S.gb/1632808‑1632946 | ctGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAg > 1:3292037/1‑71 (MQ=255)ctGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAg > 1:4285497/1‑71 (MQ=255)ctGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAg > 1:5172017/1‑71 (MQ=255)ctGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAg > 1:514710/1‑71 (MQ=255)ctGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAg > 1:4984496/1‑71 (MQ=255) tGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAg > 1:570682/1‑70 (MQ=255) tttCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCg > 1:353846/1‑71 (MQ=255) tttCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCg > 1:4346797/1‑71 (MQ=255) ttCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGt > 1:110126/1‑71 (MQ=255) aGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCa < 1:3923707/70‑1 (MQ=255) aGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCa < 1:3212994/70‑1 (MQ=255) gcgcAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCAtg < 1:3560626‑M2/71‑3 (MQ=255) gcgcAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCAtg > 1:3533636‑M2/1‑69 (MQ=255) cAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTg < 1:4857362/71‑1 (MQ=255) agagATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTg < 1:4415479/70‑1 (MQ=255) agagATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTg < 1:3405551/70‑1 (MQ=255) gaTTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCAtg > 1:3338894‑M2/1‑62 (MQ=255) gaTTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGa < 1:4381380/71‑1 (MQ=255) aTTAAACCAATCACTGAGTATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGt < 1:2999090/59‑1 (MQ=255) ttAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGaaa < 1:129899/71‑1 (MQ=255) tAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAtgacggaatcctggtat > 1:1352913‑M1/1‑48 (MQ=255) tAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCA < 1:2900170‑M1/48‑1 (MQ=255) aaaCCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGaaaa < 1:1764849/70‑1 (MQ=255) aaaCCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGaaaa < 1:956686/70‑1 (MQ=255) aaCCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGaa < 1:4175985/67‑1 (MQ=255) aaCCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATa < 1:244791/71‑1 (MQ=255) aCCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCAt > 1:2372642‑M2/1‑56 (MQ=255) aCCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCAt > 1:3511693‑M2/1‑56 (MQ=255) ccAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAtgacggaatcctggta < 1:3574379‑M1/60‑17 (MQ=255) cAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGt < 1:3183933/52‑1 (MQ=255) aaTCACTGAATATGCCATGATCATAATGGCGATCGGATACCAtgacggaatcctggtatc > 1:3021642‑M1/1‑42 (MQ=255) aTCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGc < 1:3580441/71‑1 (MQ=255) tGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATa > 1:4281906/1‑61 (MQ=255) aaTATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGa > 1:3449082/1‑69 (MQ=255) aaTATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGa < 1:2502706/69‑1 (MQ=255) aaTATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGa < 1:3845549/69‑1 (MQ=255) atatGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAg < 1:916127/71‑1 (MQ=255) atatGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAg < 1:4701115/71‑1 (MQ=255) tatGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAg > 1:2759986/1‑65 (MQ=255) gCCATGATCATAATGGCGATCGGATACCAGGATTCCGt < 1:1274352/38‑1 (MQ=255) ccATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGAcc < 1:1284769/70‑1 (MQ=255) cATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGa < 1:1118721/47‑1 (MQ=255) cATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATa > 1:2623562/1‑64 (MQ=255) aTGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGa > 1:323029/1‑66 (MQ=255) aTGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCaaa < 1:1432890/71‑1 (MQ=255) tGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATa > 1:3793807/1‑50 (MQ=255) tGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCaaaa > 1:4616831/1‑71 (MQ=255) tGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCaaaa < 1:3286655/71‑1 (MQ=255) gATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGAt < 1:3760536/60‑1 (MQ=255) gATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGAt < 1:3943712/60‑1 (MQ=255) gATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAg > 1:2218072/1‑62 (MQ=255) aTCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGaa < 1:3824017/44‑1 (MQ=255) aTCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAAc < 1:1765961/70‑1 (MQ=255) tCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATAccc > 1:4046318/1‑50 (MQ=255) cATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCg > 1:5224444/1‑70 (MQ=255) cATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCg > 1:561377/1‑70 (MQ=255) tAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCgg > 1:2768201/1‑69 (MQ=255) tGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGc > 1:4226401/1‑70 (MQ=255) ggCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATa > 1:204429/1‑40 (MQ=255) ggCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGa > 1:1788912/1‑55 (MQ=255) gCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGCGAt < 1:4073133/71‑1 (MQ=255) gCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGCGAt < 1:3868075/71‑1 (MQ=255) gATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAg < 1:4641161/50‑1 (MQ=255) aTCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGCGATAAg < 1:5308647/71‑1 (MQ=255) cGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGa > 1:2490380/1‑49 (MQ=255) cGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGCGATAAGac > 1:830821/1‑71 (MQ=255) ggATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCaa < 1:3490413/52‑1 (MQ=255) gATACCAGGATTCCGTCAtggtatccgatcgccattatgatcatggcatattcagtgatt > 1:3021642‑M2/1‑18 (MQ=255) aTACCAGGATTCCGTCAtggtatccgatcgccattatgatcatggcatattcagtgattggttta > 1:1352913‑M2/1‑17 (MQ=255) tACCAGGATTCCGTCAtggtatccgatcgccattatgatcatggcatattcagtgattgg < 1:3574379‑M2/60‑45 (MQ=255) cAtgacggaatcctggtatccgatcgccattatgatcatggcatattcagtgattggtttaatctctgcgc > 1:3533636‑M1/1‑2 (MQ=255) cAtgacggaatcctggtatccgatcgccattatgatcatggcatattcagtgattggtttaatctctgcgc < 1:3560626‑M1/71‑70 (MQ=255) cAtgacggaatcctggtatccgatcgccattatgatcatggcatattcagtgattggtttaatc > 1:3338894‑M1/1‑2 (MQ=255) atgacggaatcctggtatccgatcgccattatgatcatggcatattcagtgattggt > 1:2372642‑M1/1‑1 (MQ=255) atgacggaatcctggtatccgatcgccattatgatcatggcatattcagtgattggt > 1:3511693‑M1/1‑1 (MQ=255) | CTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGCGATAAGACCACCAAT > W3110S.gb/1632808‑1632946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |