| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 73 (1.270) | 48/100 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
TATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATG > W3110S.gb/2172240‑2172375 | tatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGATAATAACGGTCTg < 1:789698/70‑1 (MQ=255)tatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa < 1:1907087/71‑1 (MQ=255) tttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc > 1:1942296/1‑71 (MQ=255) ttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc < 1:4669483/70‑1 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt > 1:1037792/1‑70 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt < 1:621622/70‑1 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt < 1:5048339/70‑1 (MQ=255) tGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTa < 1:3633255/70‑1 (MQ=255) ggCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAc < 1:987611/70‑1 (MQ=255) gCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAcc < 1:5247524/70‑1 (MQ=255) ggTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg < 1:4444420/71‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCt < 1:1096935/60‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:1625876/70‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:1657794/1‑70 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:752268/70‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCtt < 1:1576812/60‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:2345973/69‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa < 1:1740951/71‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa < 1:3465538/71‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg > 1:4468055/1‑71 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt > 1:612004/1‑71 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt < 1:176887/70‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt < 1:1351442/70‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:4580173/71‑1 (MQ=255) cTTCGGCGATAAGCATTGTTGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAccc > 1:1280954/1‑58 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGac < 1:674992/71‑1 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa > 1:3046097/1‑70 (MQ=255) ttCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCa > 1:898724/1‑58 (MQ=255) ttCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa > 1:3916111/1‑62 (MQ=255) ttCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa > 1:2378294/1‑69 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa > 1:265338/1‑68 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTa > 1:439957/1‑48 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:4824865/71‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATATTACCCAGCAATAGTGGACACGCGGCt < 1:984463/71‑1 (MQ=255) tAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:5132511/1‑70 (MQ=255) aGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:684610/70‑1 (MQ=255) aGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:5127933/70‑1 (MQ=255) aGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:2529925/70‑1 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa < 1:2604972/53‑1 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTa > 1:685494/1‑41 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt > 1:1307015/1‑53 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:409799/71‑1 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTATGATCtaa > 1:178549/1‑39 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:4656740/1‑71 (MQ=255) tGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:3596883/47‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt > 1:4271775/1‑44 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:4758204/60‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg < 1:1415551/39‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:740639/52‑1 (MQ=255) aCTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 1:3301282/1‑71 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:1097025/1‑42 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1649993/71‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:680653/71‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:2706400/71‑1 (MQ=255) tCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:4794297/1‑69 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:348118/70‑1 (MQ=255) gCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc < 1:4485016/71‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:1879681/61‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:3238004/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:3244344/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:2860715/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:1905745/69‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:2005256/1‑47 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:4049008/71‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:3676821/1‑71 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:2986973/71‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:3048320/71‑1 (MQ=255) agaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1802534/59‑1 (MQ=255) agaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:3140776/70‑1 (MQ=255) gaATAACGGTCTGTTCTTACCCAGCATTAGTGGACACGCTGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:4765808/69‑1 (MQ=14) gaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa > 1:5152127/1‑71 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGaca > 1:946966/1‑35 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGaca > 1:953440/1‑35 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:2020388/1‑45 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:559345/1‑65 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:1330946/1‑65 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:4189065/1‑65 (MQ=255) aTAACGGTCTGATCTTACCCATCAATAGTGGACACGCGGCTAAGTTAGTAAACTCTCAGTCAGAGGTGAc < 1:1764999/70‑1 (MQ=14) acagTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:4115775/68‑1 (MQ=14) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:2943461/71‑1 (MQ=35) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:2605628/1‑70 (MQ=37) ggTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2876006/45‑1 (MQ=35) ggTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:790408/71‑1 (MQ=32) gTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg < 1:165118/71‑1 (MQ=31) | TATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATG > W3110S.gb/2172240‑2172375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |