| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3693352 | 0 (0.000) | 11 (0.210) | 7/92 | NT | 100% | noncoding (1524/1542 nt) | rrsC | 16S ribosomal RNA |
| ? | W3110S.gb | 4213167 = | NA (NA) | noncoding (1512/1542 nt) | rrsE | 16S ribosomal RNA | |||||
ACTTCCTATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC > W3110S.gb/3693283‑3693422 | aCTTCCTATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc < 1:4535100/71‑1 (MQ=34)aCTTCCTATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc < 1:3368914/71‑1 (MQ=34) aaTCTGTGTGAGCACTGCAAAGAACTCTTCTTTAAGGTAAGGAGGTGATCCAACCAtaggggaacctgcgg < 1:2674559‑M1/71‑16 (MQ=255) tgtgAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcggtt < 1:4387357‑M1/67‑18 (MQ=255) tgtgAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcggtt < 1:5305526‑M1/67‑18 (MQ=255) gCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcggtt > 1:681042‑M1/1‑45 (MQ=255) cTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcg < 1:2874744‑M1/56‑15 (MQ=255) cAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcggttg > 1:1943673‑M1/1‑39 (MQ=255) gAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtag > 1:883450‑M1/1‑35 (MQ=255) aCGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcggttg > 1:710879‑M1/1‑33 (MQ=255) cGCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcggt < 1:5028090‑M1/48‑17 (MQ=255) gCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcggtt > 1:5186340‑M1/1‑31 (MQ=255) gCTTCTTTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcgg < 1:1830497‑M1/46‑16 (MQ=255) ttcttTAAGGTAAGGAGGTGATCCAACCGtaggggaacctgcg < 1:5265081‑M1/43‑15 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcaca > 1:3541929‑M1/1‑5 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcaca > 1:4303450‑M1/1‑5 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcaca > 1:476120‑M1/1‑5 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcaca > 1:3543821‑M1/1‑5 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcaca > 1:3166860‑M1/1‑5 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttg > 1:1584667‑M1/1‑5 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttaccttaaa > 1:1807982‑M1/1‑5 (MQ=255) aaCCGtaggggaacctgcggttggatcacctccttacct < 1:5036036‑M1/39‑35 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagat > 1:4558797‑M1/1‑4 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacaga < 1:3281385‑M1/70‑67 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacaga < 1:4060827‑M1/70‑67 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaagcg > 1:4219522‑M1/1‑4 (MQ=255) aCCGtaggggaacctgcggttggatcacctccttaccttaaagaa > 1:3884330‑M1/1‑4 (MQ=255) ccGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagatt < 1:4419969‑M1/71‑69 (MQ=255) ccGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagatt > 1:3924092‑M1/1‑3 (MQ=255) ccGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagatt < 1:2568690‑M1/71‑69 (MQ=255) ccGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagatt < 1:673705‑M1/71‑69 (MQ=255) ccGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgca > 1:2603339‑M1/1‑3 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattg < 1:2772945‑M1/71‑70 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgca < 1:1967825‑M1/55‑54 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagcg < 1:2488152‑M1/46‑45 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccttaaagaagc > 1:4920743‑M1/1‑2 (MQ=255) cGtaggggaacctgcggttggatcacctccttaccataaagaagcgtactttgcagtgctcacacagattg < 1:2610154‑M1/71‑70 (MQ=255) gtaggggaacctgcggttggatcacctccttaccttaaagaagcgtcctttgc < 1:4307892‑M1/53‑53 (MQ=255) gtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgt < 1:1421400‑M1/71‑71 (MQ=255) gtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattgt < 1:127399‑M1/71‑71 (MQ=255) gtaggggaacctgcggttggatcacctccttaccttaaagaagcgtactttgcagtgctcacacagattg > 1:101080‑M1/1‑1 (MQ=255) | ACTTCCTATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC > W3110S.gb/3693283‑3693422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |