| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 67 (1.240) | 40/94 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
CCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > W3110S.gb/3750523‑3750662 | cccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA > 1:615419‑M1/1‑70 (MQ=255) ccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaa > 1:1807029‑M1/1‑69 (MQ=255) ccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaa > 1:565926‑M1/1‑69 (MQ=255) ccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa < 1:4581373‑M1/70‑2 (MQ=255) ccTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa < 1:1372990‑M1/70‑2 (MQ=255) cTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaa > 1:4442524‑M1/1‑68 (MQ=255) cTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaa > 1:1228711‑M1/1‑68 (MQ=255) gtgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:968439‑M1/1‑66 (MQ=255) gAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaag > 1:5270271‑M1/1‑64 (MQ=255) aaTATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:2717594‑M1/70‑8 (MQ=255) aaTATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:1658136‑M1/70‑8 (MQ=255) aaTATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:4529172‑M1/70‑8 (MQ=255) aaTATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt > 1:103384‑M1/1‑63 (MQ=255) atatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaa < 1:1535720‑M1/71‑10 (MQ=255) atatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagta < 1:1120076‑M1/70‑9 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:4846333‑M1/71‑13 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:3535607‑M1/71‑13 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaac > 1:3435632‑M1/1‑59 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA < 1:4128100‑M1/59‑1 (MQ=255) aCATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaa > 1:122193‑M1/1‑57 (MQ=255) cATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac < 1:2900141‑M1/71‑16 (MQ=255) cTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:3107181‑M1/1‑53 (MQ=255) tGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:4559171‑M1/1‑52 (MQ=255) tGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:3879292‑M1/1‑52 (MQ=255) tGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAa < 1:1035009‑M1/53‑2 (MQ=255) gCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:3846684‑M1/58‑8 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagag < 1:2684030‑M1/70‑21 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgaga < 1:4485383‑M1/69‑20 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga < 1:3219495‑M1/67‑18 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:1103614‑M1/1‑50 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagta < 1:1247616‑M1/56‑9 (MQ=255) taCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatt < 1:563066‑M1/70‑24 (MQ=255) taCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatga > 1:3983334‑M1/1‑47 (MQ=255) aCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaa > 1:4800351‑M1/1‑46 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:3082927‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:3411447‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagaga < 1:4344683‑M1/66‑22 (MQ=255) gATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctt > 1:1106299‑M1/1‑43 (MQ=255) tAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttg > 1:2197113‑M1/1‑40 (MQ=255) tAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:2159431‑M1/1‑40 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:1347653‑M1/71‑34 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:3673632‑M1/71‑34 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:107458‑M1/71‑34 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgca < 1:1380259‑M1/70‑33 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa > 1:4559323‑M1/1‑37 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:394125‑M1/70‑34 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa > 1:225702‑M1/1‑37 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa < 1:2900787‑M1/70‑36 (MQ=255) cAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggca < 1:3304926‑M1/71‑40 (MQ=255) cAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggc < 1:2533083‑M1/70‑39 (MQ=255) cAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:850464‑M1/65‑34 (MQ=255) cAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaa < 1:4973652‑M1/65‑34 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggca > 1:2251284‑M1/1‑31 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggca > 1:3284086‑M1/1‑31 (MQ=255) aGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggca > 1:1736121‑M1/1‑31 (MQ=255) gATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa > 1:3365592‑M1/1‑30 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatg < 1:2604245‑M1/52‑24 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt < 1:179389‑M1/70‑45 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt < 1:2867946‑M1/70‑45 (MQ=255) tatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaa < 1:1572470‑M1/70‑47 (MQ=255) tatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaa < 1:2889426‑M1/70‑47 (MQ=255) tatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaat > 1:5086271‑M1/1‑24 (MQ=255) tatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagag > 1:3304115‑M1/1‑24 (MQ=255) atGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt > 1:1845480‑M1/1‑23 (MQ=255) atGCAAGCACCATCATTTACTAAaacaagtaaataaacgagaga > 1:1334057‑M1/1‑23 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaaga > 1:2756888‑M1/1‑22 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaaga > 1:2004158‑M1/1‑22 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagat < 1:1572246‑M1/44‑23 (MQ=255) gCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgaccttt > 1:2193379‑M1/1‑21 (MQ=255) gCAAGCACCATCATTTACTAAaacaagtaaataaa > 1:261848‑M1/1‑21 (MQ=255) cAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatat < 1:2291261‑M1/71‑52 (MQ=255) cAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagata > 1:2414538‑M1/1‑20 (MQ=255) aaGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa < 1:3829798‑M1/54‑36 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag > 1:3748458‑M1/1‑18 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag > 1:5158959‑M1/1‑18 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgac > 1:5257020‑M1/1‑18 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatta > 1:72394‑M1/1‑17 (MQ=255) catcatTTACTAAaacaagtaaataaacgagagatgacctttgca < 1:3410634‑M1/45‑33 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaaca > 1:3549260‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaaca > 1:2060886‑M1/1‑11 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgc < 1:2888776‑M1/40‑32 (MQ=255) tttACTAAaacaagtaaataaacgagagatgacctttgcaaaag > 1:1261668‑M1/1‑8 (MQ=255) aCTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:138546‑M1/1‑5 (MQ=255) aCTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:713368‑M1/39‑35 (MQ=255) cTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagat < 1:886706‑M1/70‑67 (MQ=255) cTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagca < 1:3500828‑M1/59‑56 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatca > 1:5317444‑M1/1‑3 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatata < 1:3123245‑M1/55‑53 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatata < 1:3116977‑M1/55‑53 (MQ=255) aaaacaagtaaataaacgagagatgacctttgcaaa > 1:2267591‑M1/1‑2 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:2891635‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:2061593‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcac < 1:4318512‑M1/70‑70 (MQ=255) | CCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > W3110S.gb/3750523‑3750662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |