| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3835941 | 45 (0.770) | 3 (0.060) | 3/88 | NT | 6.3% | coding (641/936 nt) | rfaS | lipopolysaccharide core biosynthesis protein |
| ? | W3110S.gb | = 3835955 | 50 (0.990) | coding (655/936 nt) | rfaS | lipopolysaccharide core biosynthesis protein | |||||
AGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGACTCTTCGTATA > W3110S.gb/3835873‑3836011 | aGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAG > 1:1917269‑M1/1‑69 (MQ=255)aGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAG > 1:3051608‑M1/1‑69 (MQ=255) gATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTagaag < 1:589609/71‑1 (MQ=255) aTAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTagaag < 1:2266099/70‑1 (MQ=255) aCATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACAt > 1:107038/1‑70 (MQ=255) catcatCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTa < 1:485606/71‑1 (MQ=255) tcatcTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTaaa < 1:3070351/71‑1 (MQ=255) catcTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAAt > 1:1816937/1‑71 (MQ=255) atcTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAAt > 1:1856184/1‑70 (MQ=255) gACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGcatttaatgttcttctaata < 1:5342493‑M1/71‑21 (MQ=255) gACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTa < 1:1624945/61‑1 (MQ=255) gACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAAAATATTaga < 1:2552429/52‑1 (MQ=255) aCTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGctaata < 1:5114173‑M2/70‑7 (MQ=255) cTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGctaatat < 1:2379961‑M2/70‑8 (MQ=255) cTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAAtata < 1:2962959/71‑1 (MQ=255) tCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGctaat < 1:1905481‑M2/66‑6 (MQ=255) cAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGcatttaatgttcttctaatattctc > 1:1979258‑M1/1‑46 (MQ=255) cAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGcatttaatgttcttctaatattc < 1:4500597‑M1/69‑24 (MQ=255) cAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTa > 1:1262066/1‑56 (MQ=255) cAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAAtt > 1:5110953/1‑71 (MQ=255) cAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAAtt > 1:4344772/1‑71 (MQ=255) aaGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAAttgt > 1:153633/1‑71 (MQ=255) aGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAAttgtt < 1:3099296/71‑1 (MQ=255) gTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTaaa > 1:2934480/1‑54 (MQ=255) tgattgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACAtt < 1:840022/46‑1 (MQ=255) tgattgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATaa > 1:1598293/1‑60 (MQ=255) tgattgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGatat > 1:2065820/1‑70 (MQ=255) tgattgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGatat > 1:4372552/1‑70 (MQ=255) tgattgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGatat < 1:4110438/70‑1 (MQ=255) gattgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACAtt < 1:1781685/45‑1 (MQ=255) attgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATaa < 1:4866743/70‑1 (MQ=255) attgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAAc < 1:3078616/71‑1 (MQ=255) ttgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAAcc < 1:1062800/71‑1 (MQ=255) ttgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAAcc < 1:2574893/71‑1 (MQ=255) ttgaAAAACAAATATCTTATGAAGAGAACATTAGAAGAACATTAAATGctaatat > 1:5089312‑M2/1‑48 (MQ=255) tgaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACa < 1:5007525/40‑1 (MQ=255) gaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTaa > 1:1473988/1‑43 (MQ=255) gaAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCa > 1:1372909/1‑70 (MQ=255) aaaaCAAATATCTTATGAAGAGAATATTAgaagaa > 1:3395474/1‑35 (MQ=255) aaaaCAAATATCTTATGAAGAGAATATTAGAAGAAc > 1:100542/1‑36 (MQ=255) aaaaCAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGc < 1:5327151‑M2/45‑2 (MQ=255) aaaaCAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCa > 1:566859/1‑68 (MQ=255) aaCAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGaa < 1:1139051/71‑1 (MQ=255) aaCAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGa > 1:3980712/1‑70 (MQ=255) aCAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGaaa < 1:5231081/71‑1 (MQ=255) tATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAAt > 1:2570722/1‑67 (MQ=255) tATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATctgg > 1:1455117/1‑71 (MQ=255) aTGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATctg > 1:2488248/1‑69 (MQ=255) gAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGatat > 1:2196003/1‑47 (MQ=255) agagAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGa > 1:805850/1‑71 (MQ=255) agagAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGa > 1:419432/1‑71 (MQ=255) gagaATATTAGAAGAACATTAAATGctaatattctcttcataagatatttgtttttcaatcaaatactttg > 1:1979258‑M2/1‑25 (MQ=255) gagaATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAAcc < 1:1203902/48‑1 (MQ=255) gagaATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGAc < 1:4906547/71‑1 (MQ=255) agaATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGAct < 1:4078218/71‑1 (MQ=255) agaATATAAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATctggct < 1:12239/66‑1 (MQ=255) gaATATTAGAAGAACATTAAATGctaatattctcttcataagatatttgtttttcaatcaaatactttg < 1:4500597‑M2/69‑47 (MQ=255) atatTAGcatttaatgttcttctaatgttctcttcataagatatttgtttttcaa > 1:5089312‑M1/1‑7 (MQ=255) atatTAGcatttaatgttcttctaatattctcttcataagatatttgtttttcaatcaaatactttgaag < 1:2379961‑M1/70‑64 (MQ=255) atatTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGActct < 1:2662579/70‑1 (MQ=255) tatTAGcatttaatgttcttctaatattctcttcataagatatttgtttttcaatcaaatactttgaagt < 1:5114173‑M1/70‑65 (MQ=255) tatTAGAAGAACATTAAATGctaatattctcttcataagatatttgtttttcaatcaaatactttgaagtc < 1:5342493‑M2/71‑52 (MQ=255) tatTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGACTCtt < 1:2735447/70‑1 (MQ=255) tatTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGACTCTTc < 1:5082212/71‑1 (MQ=255) tatTAGAAGAAAATTAAATGCTAATATAATTGTTGATATAACCAAAGaa < 1:2640234/49‑1 (MQ=255) atTAGcatttaatgttcttctaatattctcttcataagatatttgtttttcaatcaaatactttga < 1:1905481‑M1/66‑62 (MQ=255) ttAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGa < 1:5174129/63‑1 (MQ=255) tAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGACTCTTCGta > 1:2648481/1‑71 (MQ=255) tAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGACTCTTCGta > 1:4750485/1‑71 (MQ=255) agaagaACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATctggctg > 1:1333349/1‑59 (MQ=255) agaagaACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGACTCtt > 1:3892240/1‑66 (MQ=255) gcatttaatgttcttctaatattctcttcataagatatttgtttt < 1:5327151‑M1/45‑45 (MQ=255) gaagaaCATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGACTCTTCGtata < 1:4585546/71‑1 (MQ=255) gaagaaCATTAAATGCTAATATAATTGGTGATATaa > 1:3409684/1‑36 (MQ=255) | AGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGAAGAACATTAAATGCTAATATAATTGTTGATATAACCAAAGAAAACCAATCTGGCTGGACTCTTCGTATA > W3110S.gb/3835873‑3836011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |