| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 77 (1.320) | 11 (0.260) +AGGGTCCCTAAGTC |
11/74 | NT | 24.0% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 19 (0.320) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCC > W3110S.gb/3464809‑3464940 | agttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtct < 1:3717012‑M2/1‑1 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa < 1:1648022‑M2/9‑1 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:5013171‑M2/52‑71 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:2270641‑M2/14‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:120489‑M2/48‑70 (MQ=255) agtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:2189409‑M2/46‑54 (MQ=255) ggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt > 1:4182861/1‑65 (MQ=31) atgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:1810205‑M2/41‑71 (MQ=255) tGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc > 1:2183403/1‑61 (MQ=33) tGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGcc < 1:4888689/70‑1 (MQ=35) tGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt > 1:170685/1‑71 (MQ=34) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:2986943‑M2/8‑1 (MQ=255) gTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:83699/70‑1 (MQ=35) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGa > 1:4697232‑M2/37‑65 (MQ=255) cTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt < 1:3231839/70‑1 (MQ=35) tCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGcc < 1:1372777/62‑1 (MQ=35) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGGCTTTCGACTGAGCCTTTCGTTTTAt < 1:2784445‑M2/43‑1 (MQ=255) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 1:858180/53‑1 (MQ=35) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt < 1:635051/71‑1 (MQ=34) aagttgtcataaagggtccctaagtcTAAAACGAAAGGc > 1:4542409‑M2/27‑39 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:3283005‑M2/23‑69 (MQ=255) ttCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCt > 1:1557368/1‑71 (MQ=34) cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg > 1:3308487/1‑54 (MQ=35) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg > 1:2611809/1‑70 (MQ=35) cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:2190434/37‑1 (MQ=37) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGt > 1:2231578/1‑71 (MQ=34) acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGtt < 1:5228517/71‑1 (MQ=34) gtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:3528299‑M2/12‑42 (MQ=255) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGcc < 1:4446387/42‑1 (MQ=38) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGcc < 1:5228344/42‑1 (MQ=38) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTcc > 1:1218272/1‑71 (MQ=34) acaacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTccc > 1:4550259/1‑70 (MQ=35) | TTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCC > W3110S.gb/3464809‑3464940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |