New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 30939384 (1.430)5 (0.090) 3/100 NT 5.5% coding (503/588 nt) yagZ conserved hypothetical protein
?W3110S.gb = 309413 91 (1.590)coding (483/588 nt) yagZ conserved hypothetical protein

Only 100 of 110 total aligned reads displayed.

CGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGTTAGCCAGCG  >  W3110S.gb/309346‑309483
                                                                   |                                                                      
cgccgcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCt                                                                      >  1:3406563/1‑70 (MQ=255)
cgccgcTCCAGATGCCTTCCGGAAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCg                                                                        >  1:2332928/1‑68 (MQ=255)
 gccgcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGAGGTGGTACCATTGGTGGTACCGCtga                                                                    >  1:5170255/1‑71 (MQ=255)
   cgcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCtgatg                                                                  <  1:3230111/71‑1 (MQ=255)
   cgcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCtgatg                                                                  <  1:5065397/71‑1 (MQ=255)
    gcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCtgatga                                                                 <  1:4936881/71‑1 (MQ=255)
     cTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTgatgat                                                                <  1:3338236/71‑1 (MQ=255)
     cTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTgatgat                                                                <  1:242992/71‑1 (MQ=255)
      tCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTgatgat                                                                <  1:3110256/70‑1 (MQ=255)
       ccAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCtgatga                                                                 >  1:2909732/1‑68 (MQ=255)
        cAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGatgatg                                                               <  1:4881282/69‑1 (MQ=255)
        cAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGga                                                             <  1:2302793/71‑1 (MQ=255)
           aTGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGgag                                                            >  1:968684/1‑69 (MQ=255)
            tGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAg                                                         >  1:2273717/1‑71 (MQ=255)
            tGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAg                                                         >  1:1316066/1‑71 (MQ=255)
             gCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAgg                                                        >  1:513862/1‑71 (MQ=255)
             gCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAgg                                                        >  1:2697634/1‑71 (MQ=255)
              ccTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGaa                                                          <  1:5011197/68‑1 (MQ=255)
              ccTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGt                                                       >  1:4433320/1‑71 (MQ=255)
              ccTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGt                                                       <  1:2986957/71‑1 (MQ=255)
               cTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAgg                                                        >  1:3938761/1‑69 (MQ=255)
                ttCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGaa                                                          <  1:1469148/66‑1 (MQ=255)
                 tCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGa                                                     >  1:3789106/1‑70 (MQ=255)
                 tCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGa                                                     >  1:3618776/1‑70 (MQ=255)
                 tCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGa                                                     >  1:3305253/1‑70 (MQ=255)
                  ccGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGc                                                                       <  1:4536442‑M2/51‑2 (MQ=255)
                  ccGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGa                                                     <  1:3912748/69‑1 (MQ=255)
                   cGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGaaa                                                   >  1:885960/1‑70 (MQ=255)
                     gTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCa                                                <  1:93865/71‑1 (MQ=255)
                      tAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAAc                                                  <  1:5306206/68‑1 (MQ=255)
                      tAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCAt                                               <  1:692065/71‑1 (MQ=255)
                        gagTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATcc                                             >  1:1626682/1‑71 (MQ=255)
                         agTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTg                                                      <  1:1104346/61‑1 (MQ=255)
                          gTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGaaa                                                   >  1:528567/1‑63 (MQ=255)
                          gTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCtg                                           >  1:3934704/1‑71 (MQ=255)
                           tGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCtgt                                          <  1:4389932/71‑1 (MQ=255)
                           tGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCtgt                                          <  1:3772845/71‑1 (MQ=255)
                           tGCTGTAATCAGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCtgt                                          >  1:649691/1‑71 (MQ=255)
                              tGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGt                                                       <  1:5130701/55‑1 (MQ=255)
                                tAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggt                                     >  1:2346606/1‑71 (MQ=255)
                                tAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggt                                     >  1:4165259/1‑71 (MQ=255)
                                tAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggt                                     >  1:2607382/1‑71 (MQ=255)
                                tAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCg                                       <  1:4432039/69‑1 (MQ=255)
                                 aaTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAAcc                                                 <  1:1601481/58‑1 (MQ=255)
                                  aTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCt                                            >  1:1899059/1‑62 (MQ=255)
                                  aTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggtgg                                   >  1:4864901/1‑71 (MQ=255)
                                  aTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggtgg                                   >  1:3830758/1‑71 (MQ=255)
                                  aTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggt                                     >  1:5250554/1‑69 (MQ=255)
                                      gTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTAc                                <  1:2378310/70‑1 (MQ=255)
                                       ttACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGaaa                                                   <  1:5127363/50‑1 (MQ=255)
                                       ttACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTAc                                <  1:199566/69‑1 (MQ=255)
                                       ttACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGa                              <  1:4531349/71‑1 (MQ=255)
                                        tACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGAt                             >  1:307401/1‑71 (MQ=255)
                                         aCTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGAt                             <  1:4809911/70‑1 (MQ=255)
                                          cTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGAtt                            <  1:5070042/70‑1 (MQ=255)
                                          cTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTg                           <  1:4635599/71‑1 (MQ=255)
                                          cTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTg                           <  1:4929210/71‑1 (MQ=255)
                                             cGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCt                         <  1:1439944/70‑1 (MQ=255)
                                              ggtggtACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTTGTACGATTGCTg                        >  1:984775/1‑70 (MQ=255)
                                              ggtggtACCATTG‑TGGTACCAccgcagtaacagattacagcactct                                               >  1:113239‑M2/1‑21 (MQ=255)
                                               gtggtACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGTTTGCTgg                       <  1:738530/70‑1 (MQ=255)
                                                tggtACCATTGGTGGTACCGccgcagtaacagattacagcactctaccgg                                          >  1:774292‑M2/1‑20 (MQ=255)
                                                tggtACCATTGGTGGTACCGCTGATGATGGAGAAgg                                                        >  1:3723403/1‑36 (MQ=255)
                                                tggtACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCa                     <  1:618071/71‑1 (MQ=255)
                                                tggtACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCa                     >  1:1001753/1‑71 (MQ=255)
                                                tggtACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCa                     <  1:837438/71‑1 (MQ=255)
                                                  gtACCATTGGTGGTATCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCAtt                   <  1:1810379/71‑1 (MQ=255)
                                                  gtACCATTGGTGGTACCGccgcagtaacagattacagcactctaccggaa                                        <  1:4988646‑M2/50‑33 (MQ=255)
                                                  gtACCATTGGTGGTACCGccgcagtaacagattacagcactctaccggaa                                        <  1:851708‑M2/50‑33 (MQ=255)
                                                  gtACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCg                                       <  1:4843434/51‑1 (MQ=255)
                                                   tACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTg                           <  1:4628566/62‑1 (MQ=255)
                                                   tACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCa                     <  1:5226608/68‑1 (MQ=255)
                                                   tACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTCCGGTGGTACGATTg                           <  1:2629803/62‑1 (MQ=255)
                                                    aCCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGAt                             >  1:700835/1‑59 (MQ=255)
                                                    aCCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTg                           >  1:1424841/1‑61 (MQ=255)
                                                    aCCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTg                           >  1:2320762/1‑61 (MQ=255)
                                                     ccATTGGTGGTACCGcagtaacagattacagcactctaccggaaggcatctggagcggcgacgttagcgt                 >  1:848683‑M2/1‑15 (MQ=255)
                                                     ccATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggtgg                                   <  1:3647332/52‑1 (MQ=255)
                                                      cATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCtgt                                          >  1:971183/1‑44 (MQ=255)
                                                      cATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCgg                                      >  1:4630227/1‑48 (MQ=255)
                                                      cATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTaa               >  1:3611748/1‑71 (MQ=255)
                                                      cATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTaa               <  1:2448403/71‑1 (MQ=255)
                                                       aTTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggtg                                    <  1:3110459/49‑1 (MQ=255)
                                                       aTTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggtg                                    <  1:340092/49‑1 (MQ=255)
                                                       aTTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAAc              >  1:3219211/1‑71 (MQ=255)
                                                       aTTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAAc              >  1:3409349/1‑71 (MQ=255)
                                                        ttGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTAc                                <  1:2698646/52‑1 (MQ=255)
                                                          ggtggtACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTgg                       <  1:3030825/59‑1 (MQ=255)
                                                          ggtggtACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCa                     >  1:4676728/1‑61 (MQ=255)
                                                          ggtggtACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCAtt                   >  1:1596698/1‑63 (MQ=255)
                                                          ggtggtACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCAtt                   >  1:3623949/1‑63 (MQ=255)
                                                          ggtggtACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGt           >  1:5260856/1‑71 (MQ=255)
                                                           gtggtACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGt           <  1:5272711/70‑1 (MQ=255)
                                                            tggtACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGt           <  1:3583146/69‑1 (MQ=255)
                                                               tACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGTTAGcc      <  1:4985347/71‑1 (MQ=255)
                                                                 ccGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTg                        >  1:4262857/1‑51 (MQ=255)
                                                                 ccGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGTTAGCCAg    <  1:3497585/71‑1 (MQ=255)
                                                                  cGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGTTAGCCAGc   <  1:3017548/71‑1 (MQ=255)
                                                                  cGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGTTAGCCAGc   <  1:21993/71‑1 (MQ=255)
                                                                   gCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGTTAGCCAGCg  <  1:5065395/71‑1 (MQ=255)
                                                                   |                                                                      
CGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGGCATTGTAACCGTTAGCCAGCG  >  W3110S.gb/309346‑309483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.