New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	525265 =	NA (NA)	3 (0.050)	3/100	NT	100%	coding (2781/4281 nt)	rhsD	rhsD element protein
	?	W3110S.gb	525295 =	0 (0.000)					coding (2811/4281 nt)	rhsD	rhsD element protein

CGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGGATAACCGCATCGCGGAGGATGCGCACTATGTCTACCGCCACGATGAATACGGCAGGCTGACGGAGAAGACGG  >  W3110S.gb/525225‑525365                                                                       |                                                                       gtggcggtagacatagtgcgcatcctccgcgatgcggttatccggccacactgtgagtgtactgtccgggt                                                                        >  1:3110774‑M2/71‑71 (MQ=255) gtggcggtagacatagtgcgcatcctccgcgatgcggttatccggccacactgtgagtgtactgtccgggt                                                                        <  1:4648658‑M2/1‑1 (MQ=255) gtggcggtagacatagtgcgcatcctccgcgatgcggttatccggccacactgtgagtgtactgtccgggt                                                                        <  1:4944700‑M2/1‑1 (MQ=255)                                            ggccacactgtgagtgtactgtccgggTAACCGCATCGCGGAGGATg                                                     <  1:2045296‑M2/20‑1 (MQ=255)                                            ggccacactgtgagtgtactgtccgggTAACCGCATCGCGGAGGATGCGCACTATGTCTACCGCCACGAt                              >  1:5351511‑M2/28‑70 (MQ=255)                                                      tgagtgtactgtccggaTAACCGCATCGCGGAGGATGCGCACTATGTCTACCGCCACGATGAATACGGCAg                   >  1:3932813‑M2/18‑71 (MQ=255)                                                                       TAACCGCATCGCGGAGGATGCGCACTATGTCTACCGCCACGATGAATACGGCAGGCTGACGGAGAAGACgg  <  1:4467459‑M2/71‑1 (MQ=255)                                                                       TAACCGCACCGCGGAGGATGCGCACTATGTCTACCGCCACGATGAATACGGCAGGCTGACGGAGAAGACgg  <  1:343836‑M2/71‑1 (MQ=255)                                                                       |                                                                       CGGACCCGGCGGGCAACCGGCTGCCGGACCCGGAGCTGCACCCGGACAGTACACTCACAGTGTGGCCGGATAACCGCATCGCGGAGGATGCGCACTATGTCTACCGCCACGATGAATACGGCAGGCTGACGGAGAAGACGG  >  W3110S.gb/525225‑525365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.