| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 48 (0.820) | 35/102 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 132 total aligned reads displayed.
CCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAAG > W3110S.gb/3932866‑3933003 | gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc > 1:1233893‑M2/65‑71 (MQ=255)ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:2585805‑M2/71‑4 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc > 1:1890748‑M2/64‑71 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATccc < 1:5033957‑M2/9‑1 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:1757962‑M2/70‑7 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg < 1:1009212‑M2/11‑1 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctac > 1:4016297‑M2/1‑62 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatactac < 1:4481000‑M2/71‑10 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg < 1:1640368‑M2/11‑1 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGcc > 1:822522‑M2/58‑71 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc < 1:3037778‑M2/13‑1 (MQ=255) gCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:3641691‑M2/65‑6 (MQ=255) ctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTc > 1:2080412‑M2/56‑71 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc > 1:2326828‑M2/1‑57 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:710398‑M2/1‑57 (MQ=255) gactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:689820‑M2/52‑70 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:1205743‑M2/19‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg > 1:3430123‑M2/51‑70 (MQ=255) cGTCCCGCTTTATAACCGTCTGGTTGAATTTTAAATCGGCACCACCGAAGTGtgatcctacccacgtaat > 1:3244194‑M2/1‑52 (MQ=255) cGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata > 1:2509263‑M2/1‑52 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:903465‑M2/1‑50 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:3431903‑M2/25‑1 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg > 1:2954681‑M2/47‑71 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg > 1:2478840‑M2/47‑71 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg > 1:3358911‑M2/47‑71 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:2851688‑M2/25‑1 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt < 1:1762031‑M2/26‑1 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:2859616‑M2/71‑24 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:277285‑M2/71‑24 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:446867‑M2/67‑20 (MQ=255) agtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:4749801‑M2/25‑1 (MQ=255) gtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTgg > 1:4438844‑M2/44‑71 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:4007235‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1313470‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1016343‑M2/29‑1 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacac > 1:1067508‑M2/1‑45 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:384985‑M2/41‑69 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacagg < 1:908907‑M2/71‑30 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacag > 1:3872765‑M2/1‑42 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacag > 1:4397633‑M2/1‑42 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:2542898‑M2/33‑1 (MQ=255) ataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacagg < 1:3008454‑M2/70‑30 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc > 1:2451750‑M2/1‑40 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat > 1:2740055‑M2/1‑40 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTc < 1:3812879‑M2/34‑1 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTc < 1:4196704‑M2/34‑1 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:3182865‑M2/36‑71 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcct > 1:4522697‑M2/1‑38 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:5315629‑M2/1‑38 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccac > 1:2353174‑M2/1‑38 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcAGTGATcc > 1:2600128‑M2/34‑41 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGc > 1:4603522‑M2/34‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:3902054‑M2/33‑70 (MQ=255) gTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc < 1:4183463‑M2/71‑37 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGc < 1:397640‑M2/37‑1 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:2704473‑M2/53‑20 (MQ=255) gacgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:1240058‑M2/40‑1 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgg > 1:2638748‑M2/1‑32 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGAc < 1:437531‑M2/43‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGAc < 1:2318382‑M2/43‑1 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:2211‑M2/49‑20 (MQ=255) gtgtccactattgctgggtaagatcAGTTATCCCGGGCCTCGCTGAAAAGTggg < 1:4013581‑M2/29‑1 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:4799438‑M2/46‑1 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGATGAAAAGTGGGAAGTCAGCGAAgaccg > 1:2855179‑M2/26‑68 (MQ=255) tgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTa < 1:1524227‑M2/47‑1 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaag > 1:4766830‑M2/1‑28 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttc > 1:810767‑M2/1‑27 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttc > 1:1822053‑M2/1‑27 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:2755708‑M2/46‑20 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg > 1:1439757‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg > 1:3531904‑M2/1‑25 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:4985894‑M2/21‑71 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:4053284‑M2/52‑1 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttt < 1:5277487‑M2/71‑50 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc > 1:1687221‑M2/19‑70 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCt < 1:5326873‑M2/53‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:2182310‑M2/18‑71 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:3602041‑M2/18‑71 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttc < 1:489023‑M2/64‑44 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:2449619‑M2/17‑45 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa > 1:3711538‑M2/17‑58 (MQ=255) tgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAc > 1:4563293‑M2/15‑71 (MQ=255) tCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaa < 1:788850‑M2/71‑55 (MQ=255) gctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAcc > 1:454932‑M2/14‑71 (MQ=255) ctgggtaagatcAGTGATGCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAcc < 1:5289558‑M2/58‑1 (MQ=255) ctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGGCAGCGAAGACGGTAAAACCTATACCt < 1:4707095‑M2/59‑1 (MQ=255) cGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaat < 1:2409783‑M2/71‑56 (MQ=255) tgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:857173‑M2/29‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGCAAAGAGGGAAGTCAGCGa > 1:1497554‑M2/8‑46 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTc < 1:1068325‑M2/34‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt < 1:4028191‑M2/64‑1 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttcc < 1:3930229‑M2/71‑62 (MQ=255) aagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATc > 1:1941981‑M2/7‑71 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt < 1:1799299‑M2/66‑1 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt > 1:3936899‑M2/6‑71 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:4693729‑M2/36‑1 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:4493773‑M2/2‑70 (MQ=255) AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa < 1:4700057‑M2/71‑1 (MQ=255) GTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTaa < 1:3700488‑M2/71‑1 (MQ=255) gATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAAg > 1:3804241/1‑71 (MQ=255) | CCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAAG > W3110S.gb/3932866‑3933003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |