New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 3511876	58 (0.990)	3 (0.060)	3/90	NT	5.0%	coding (2006/2199 nt)	priA	primosome factor n'
	?	W3110S.gb	= 3511884	62 (1.200)					coding (2014/2199 nt)	priA	primosome factor n'

CGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATATTGTTG  >  W3110S.gb/3511814‑3511949                                                                       |                                                                  cgcgCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTggg                                                                   >  1:3551431/1‑71 (MQ=255)   cgcCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGtt                                                                 <  1:1957379‑M2/71‑3 (MQ=255)     ccATTGTTCCTGCAACAGCTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGttct                                                               >  1:2215136‑M2/1‑67 (MQ=255)     ccATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGttct                                                               >  1:4503844‑M2/1‑67 (MQ=255)           ttCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTcc                                                         <  1:1406397/71‑1 (MQ=255)           ttCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTcc                                                         <  1:1427981/71‑1 (MQ=255)              cTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGttctcg                                                             <  1:3202587‑M2/64‑7 (MQ=255)              cTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGt                                                      <  1:4276483/71‑1 (MQ=255)                gCAACAGCTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTc                                                    >  1:690798/1‑71 (MQ=255)                gCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTc                                                    >  1:2143495/1‑71 (MQ=255)                  aacaacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTcc                                                   <  1:435444/70‑1 (MQ=255)                  aacaacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCg                                                  >  1:1681155/1‑71 (MQ=255)                   acaacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCgg                                                 <  1:1233709/71‑1 (MQ=255)                    caacTGCGTAATCTGATCCTCTCCAGACCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGc                                                >  1:3755058/1‑71 (MQ=255)                     aacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGct                                               <  1:4546842/71‑1 (MQ=255)                     aacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGct                                               <  1:2382437/71‑1 (MQ=255)                      acTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGctc                                              <  1:2192381/71‑1 (MQ=255)                        tGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGctct                                             >  1:723615/1‑70 (MQ=255)                        tGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGctct                                             >  1:730033/1‑70 (MQ=255)                         gCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTgg                                           >  1:3128513/1‑71 (MQ=255)                          cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTc                                                    >  1:1820143/1‑61 (MQ=255)                          cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTc                                                    >  1:3386868/1‑61 (MQ=255)                          cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTgg                                           <  1:2314933/70‑1 (MQ=255)                          cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTgg                                           <  1:445447/70‑1 (MQ=255)                          cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTg                                            <  1:3110126/69‑1 (MQ=255)                          cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTg                                            <  1:2998540/69‑1 (MQ=255)                           gTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCa                                         <  1:3952935/71‑1 (MQ=255)                           gTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCa                                         <  1:2589177/71‑1 (MQ=255)                               tCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTTTGGGTTCTCgg                                                            <  1:1552385/48‑1 (MQ=255)                               tCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCgg                                                            <  1:3341295/48‑1 (MQ=255)                                cTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCt                                      >  1:3826722/1‑69 (MQ=255)                                cTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTa                                     >  1:4845514/1‑70 (MQ=255)                                 tGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaaa                                   >  1:3154568/1‑71 (MQ=255)                                 tGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaaa                                   >  1:1561907/1‑71 (MQ=255)                                   aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCAc                                        >  1:2381151/1‑64 (MQ=255)                                   aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaaa                                   >  1:2384524/1‑69 (MQ=255)                                   aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaa                                    <  1:4216978/68‑1 (MQ=255)                                   aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAAc                                  <  1:1251275/70‑1 (MQ=255)                                   aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAAc                                  <  1:4243563/70‑1 (MQ=255)                                    tCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGt                                <  1:2509877/71‑1 (MQ=255)                                     ccTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGctc                                              <  1:3265224/56‑1 (MQ=255)                                      ctctCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGc                                          <  1:3123123/59‑1 (MQ=255)                                      ctctCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTgg                              <  1:1676695/71‑1 (MQ=255)                                      ctctCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTgg                              <  1:1460623/71‑1 (MQ=255)                                       tctcCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCa                                         >  1:3334656/1‑59 (MQ=255)                                       tctcCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGc                             >  1:4120425/1‑71 (MQ=255)                                        ctcCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCg                            >  1:718961/1‑71 (MQ=255)                                          ccAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGt                          >  1:3238489/1‑71 (MQ=255)                                           cAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCgg                           <  1:2227727/69‑1 (MQ=255)                                           cAGCCCAATGGCAGACGAGAAACTGTGGGTTCTCGGTCAGGTTCCGGCTCTGGCACCTAAACGTGGCGGTc                         <  1:2709080/71‑1 (MQ=255)                                             gCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGc                                          <  1:4134597/52‑1 (MQ=255)                                             gCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgc                       <  1:2536444/71‑1 (MQ=255)                                              cccACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgct                      <  1:3623422/71‑1 (MQ=255)                                               ccACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctg                     <  1:472430/71‑1 (MQ=255)                                                  cTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGt                                <  1:3718267/57‑1 (MQ=255)                                                   tGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctggcg                  <  1:2833551/70‑1 (MQ=255)                                                   tGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctgg                    >  1:3211034/1‑68 (MQ=255)                                                     gCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTgg                              >  1:4829127/1‑56 (MQ=255)                                                     gCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctggcgctg               >  1:4706882/1‑71 (MQ=255)                                                         aCGAGAAACTGTGGGttctcgtctgccagtgggctggagaggatcagattacgcagttgttgcaggaacaa           <  1:1188436‑M2/71‑57 (MQ=255)                                                         aCGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaaa                                   >  1:5200048/1‑47 (MQ=255)                                                          cGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGa          <  1:4718484/71‑1 (MQ=255)                                                           gagaAACTGTGGGttctcgtctgccagtgggctggagaggatcagattacgcagttgttgcaggaacaatg         <  1:4185970‑M2/71‑59 (MQ=255)                                                           gagaAACTGTGGGTTCTCGGTCCGGTTCCGGctct                                             <  1:3753377/35‑1 (MQ=255)                                                           gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCa                                         >  1:2727021/1‑39 (MQ=255)                                                           gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCAc                                        >  1:3422640/1‑40 (MQ=255)                                                           gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACg                                 >  1:5028937/1‑47 (MQ=255)                                                           gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTgg                              <  1:5324500/50‑1 (MQ=255)                                                           gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGa          <  1:4678225/70‑1 (MQ=255)                                                             gaAACTGTGGGttctcgtctgccagtgggctggagag                                         <  1:230310‑M2/37‑27 (MQ=255)                                                             gaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctggcg                  >  1:1456855/1‑60 (MQ=255)                                                               aaCTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATAttg     <  1:669491/71‑1 (MQ=255)                                                               aaCTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATAttg     <  1:2816644/71‑1 (MQ=255)                                                                 cTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATAttgtt   <  1:5217859/71‑1 (MQ=255)                                                                   gtgGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATAttgttg  >  1:3037307/1‑70 (MQ=255)                                                                    tgGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATAttgttg  >  1:3093420/1‑69 (MQ=255)                                                                       |                                                                  CGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATATTGTTG  >  W3110S.gb/3511814‑3511949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.