| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,960,710 | Δ1 bp | 19.6% | intergenic (+160/+260) | yjjV → / ← yjjW | predicted DNase/predicted pyruvate formate lyase activating enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,960,710 | 0 | T | . | 19.6% | 134.8 / 36.5 | 56 | intergenic (+160/+260) | yjjV/yjjW | predicted DNase/predicted pyruvate formate lyase activating enzyme |
| Reads supporting (aligned to +/- strand): ref base T (23/22); new base . (2/9); total (25/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.84e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > minE/2960644‑2960779 | aaCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCt > 1:5218969/1‑67 (MQ=33)aaCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCt > 1:3922553/1‑67 (MQ=33)aaCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCt > 1:3547113/1‑67 (MQ=33) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCt > 1:1568240/1‑71 (MQ=39) cGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTAt > 1:4005319/1‑70 (MQ=40) cGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGGCTTa > 1:3257840/1‑69 (MQ=255) ggATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATc > 1:4461945/1‑70 (MQ=40) ggATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCa > 1:2901661/1‑71 (MQ=39) cGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTAc > 1:3276628/1‑70 (MQ=40) cACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTc > 1:2578012/1‑71 (MQ=255) aCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTc < 1:1839858/70‑1 (MQ=255) aCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCt < 1:3378591/71‑1 (MQ=40) aCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCt < 1:3394913/71‑1 (MQ=40) aCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCt < 1:3399204/71‑1 (MQ=40) cgcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTAc < 1:605918/61‑1 (MQ=40) cgcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTAc < 1:3357733/61‑1 (MQ=40) cgcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTAc < 1:5250354/61‑1 (MQ=40) cATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACaa < 1:2874229/61‑1 (MQ=40) cATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGcc > 1:3626803/1‑70 (MQ=40) cATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGcc > 1:4697871/1‑70 (MQ=40) aTCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGa < 1:1469508/71‑1 (MQ=39) tCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTc < 1:4856407/62‑1 (MQ=40) ccGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAAc > 1:4984778/1‑71 (MQ=39) cGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCtg > 1:1669761/1‑62 (MQ=40) cGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAAcc > 1:909405/1‑71 (MQ=39) cAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCg < 1:3018763/69‑1 (MQ=40) aGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGt < 1:68784/55‑1 (MQ=255) ttGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCAt < 1:4466510/43‑1 (MQ=40) ttGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGc > 1:3776532/1‑71 (MQ=39) tGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCa > 1:5605636/1‑41 (MQ=38) tGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCa > 1:5612377/1‑41 (MQ=38) tGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTa > 1:1587003/1‑67 (MQ=255) tGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGcc > 1:5101441/1‑71 (MQ=39) ggCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCg > 1:1665957/1‑71 (MQ=39) gcgcACAATGCCTGATGCGACGCTTGTCGCGTCTTAt < 1:2056000/37‑1 (MQ=40) gcgcACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGa > 1:2958987/1‑59 (MQ=255) atcaATGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTGT‑TGCCGACCTGTAGGCCGGATAAg < 1:1476457/69‑1 (MQ=0) tcaATGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTGT‑TGCCGACCCGTAGGCCGGATa < 1:2266308/67‑1 (MQ=11) tcaATGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTGT‑TGCCGACCCGTAGGCCGGATa < 1:2289614/67‑1 (MQ=11) tcaATGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTAT‑TGCCGACCTGTAGGCCTGATAAgg < 1:2255827/70‑1 (MQ=2) tcaATGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTAT‑TGCCGACCTGTAGGCCGGATAAgg < 1:3957540/70‑1 (MQ=2) aaTGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTGT‑TGCCGACCTGTAGGCCGGATAAGGca > 1:2384491/1‑70 (MQ=2) aaTGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTGT‑TGCCGACCCGTAGGCCGGATAAg > 1:1994611/1‑68 (MQ=11) aTGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGc < 1:3790723/71‑1 (MQ=39) aTGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGAGCCGaa > 1:4569012/1‑53 (MQ=255) aTGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTGT‑TGCCGACCTGTAGGCCGGATAAGGcac < 1:4923885/71‑3 (MQ=2) tGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTGT‑TGCCGACCTGTAGGCCGGATAAGGcact < 1:5339936/71‑4 (MQ=0) ccTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTGT‑TGCCGACCCGTAGGCCGGATAAGGCGCTcg < 1:1454103/71‑2 (MQ=2) cTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTc < 1:2676927/71‑1 (MQ=39) cTGATGCGACGC‑TGTCGCGTCTTATCAGGCCTACAACTGT‑TGCCGACCCGTAGGCCGGATAAGGCGCTcgc < 1:3416544/71‑3 (MQ=2) aTGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAAc < 1:2326038/47‑1 (MQ=255) aTGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCAc < 1:963089/70‑1 (MQ=255) cGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGaa > 1:2202971/1‑43 (MQ=255) cGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAAc > 1:724543/1‑44 (MQ=255) gCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGtt < 1:118522/60‑1 (MQ=255) gCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATc > 1:1882501/1‑71 (MQ=255) cTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGtt < 1:2036814/59‑1 (MQ=255) cTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATcc < 1:2678661/71‑1 (MQ=255) cTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATcc < 1:1211336/71‑1 (MQ=255) ttGTCGCGTCTTATCATGCCTACAAGTCTGTGCCg < 1:4764514/35‑1 (MQ=255) | AACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > minE/2960644‑2960779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |