New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	15385 =	45 (0.730)	36 (0.600)	20/96	NT	56.7%	intergenic (+87/+60)	dnaJ/mokC	chaperone Hsp40, co‑chaperone with DnaK/regulatory protein for HokC, overlaps CDS of hokC
	?	minE	= 1570889	11 (0.180)					intergenic (+26/+210)	nupC/alaX	nucleoside (except guanosine) transporter/tRNA‑Ala

GCACGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/15447‑15385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCACCA  <  minE/1570889‑1570820                                                                                                                                       catCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATTACTCCCCG                                                                >  1:4819287/4‑71  atCGGCTCGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGG                                                               <  1:4117568/69‑1     GGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTT                                                            >  1:3586730/1‑71     GGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTT                                                            >  1:2920698/1‑71      GCACATTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTT                                                           >  1:2164116/1‑71          GTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTA                                                       >  1:728401/1‑71          GTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTA                                                       >  1:2924584/1‑71            TAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATG                                                     >  1:2926393/1‑71            TAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATG                                                     >  1:2844822/1‑71             AAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATG                                                     <  1:1844446/70‑1             AAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATG                                                     <  1:2832823/70‑1                TCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTAT                                                                     <  1:3708574/51‑1                   TATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTC                                              >  1:430829/1‑71                   TATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTC                                              >  1:3729055/1‑71                   TATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTT                                                           >  1:4279325/1‑58                   TATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTT                                                           >  1:3117963/1‑58                     TCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCT                                             <  1:3920470/70‑1                             AATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTT                                                            >  1:2420322/1‑47                             AATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTT                                                            >  1:1553901/1‑47                              ATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCA                                      >  1:3267779/1‑68                              ATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTAT                                                      >  1:4492979/1‑52                              ATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTT                                                         >  1:2929129/1‑49                                   ACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTT                                                         <  1:4050221/44‑1                                      ACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCG                           <  1:3546389/71‑1                                          TTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTA                                           >  1:3175185/1‑51                                          TTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTA                                           >  1:121242/1‑51                                               TTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTA                                           <  1:1919232/46‑1                                                TAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTCCTGCGAT                         >  1:2688484/1‑63                                                TAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTA                                                   >  1:2993137/1‑37                                                 AGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAG                 <  1:4305534/70‑1                                                 AGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCA                  >  1:4033767/1‑69                                                 AGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTAC                                          >  1:678103/1‑45                                                     CTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTC                                              >  1:1566550/1‑37                                                      TTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCT                                             <  1:4792338/37‑1                                                      TTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCT                                             <  1:943248/37‑1                                                         TGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACAC        >  1:943614/1‑71                                                         TGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACA         <  1:257710/70‑1                                                               TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCACCA  <  1:2314758/71‑1                                                               TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCAC    >  1:3133798/1‑69                                                               TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCAC    >  1:1989073/1‑69                                                               TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATT                        <  1:3634595/49‑1                                                                                                                                       GCACGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/15447‑15385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCACCA  <  minE/1570889‑1570820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.