New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? minE 385232 =40 (0.650)14 (0.270)
+AAGAGATG		 5/82 NT 29.3% coding (442/2106 nt) cstA carbon starvation protein
?minE 1163269 = 41 (0.670)coding (64/549 nt) ynjA conserved hypothetical protein

TTGGCCCCATCTCTTCTTTGACCAGCTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/385262‑385232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCATTACGGCGAG  >  minE/1163269‑1163283
                               ||||||||               
cTGGTCCCATCTCTTCTTTGATCATCTCACCAAGAGATGCGCCATTACGGC     <  1:857612/50‑1
cTGGTCCCATCTCTTCTTTGATCATCTCACCAAGAGATGCGCCAT           <  1:4267046/44‑1
cTGGTCCCATCTCTTCTTTGATCATCTCACCAAGAGATGCGCCAT           <  1:4448854/44‑1
cTGGTCCCATCTCTTCTTTGATCATCTCACCAAGAGATGCGCCAT           <  1:511134/44‑1
 TGGTCCCATCTCTTCTTTGATCATCTCACCAAGAGATGCGCCAT           >  1:2087755/1‑44
         TCTCTTCTTTGATCATCTCACCAAGAGATGCGCCA            >  1:4054219/1‑35
          CTCTTCTTTGATCATCTCACCAAGAGATGCGCCATTACGGCGA   <  1:4256615/43‑1
           TCTTCTTTGATCATCTCACCAAGAGATGCGCCATTACGGCGAG  >  1:3106716/1‑43
           TCTTCTTTGATCATCTCACCAAGAGATGCGCCATTACGGCGAG  >  1:3695404/1‑43
           TCTTCTTTGATCATCTCACCAAGAGATGCGCCATTA         >  1:3596421/1‑36
             TTCTTTGATCATCTCACCAAGAGATGCGCCATTACGGC     <  1:475511/38‑1
               CTTTGATCATCTCACCAAGAGATGCGCCATTACGGCGAG  >  1:1745845/1‑39
               CTTTGATCATCTCACCAAGAGATGCGCCATTACGGCGAG  >  1:2846759/1‑39
               CTTTGATCATCTCACCAAGAGATGCGCCATTACGGCGAG  >  1:3188056/1‑39
               CTTTGATCATCTCACCAAGAGATGCGCCATTACGGCGAG  >  1:5621722/1‑39
                               ||||||||               
TTGGCCCCATCTCTTCTTTGACCAGCTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/385262‑385232
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCATTACGGCGAG  >  minE/1163269‑1163283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.