| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 932321 | 56 (0.910) | 16 (0.310) +TTTTTCA |
10/84 | NT | 31.1% | intergenic (‑106/‑183) | yddG/fdnG | predicted methyl viologen efflux pump/formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| ? | minE | = 2823597 | 27 (0.440) | intergenic (+342/+616) | nrfG/pheU | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG/tRNA‑Phe | |||||
GCTGAATTTTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/932309‑932321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCCAGGGC < minE/2823597‑2823528 ||||||| GCTGAATTTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAA < 1:1718343/71‑1GCTGAATTTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAA < 1:4510137/71‑1GCTGAATTTTATATTTTTCATATGAATGACTTCCTCAAT < 1:4641228/39‑1GCTGAATTTTATATTTTTCATATGAATGACTTCCTC < 1:901119/36‑1 GAATTTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGC < 1:4609117/63‑1 GAATTTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGC < 1:5150994/63‑1 AATTTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGA < 1:4161186/57‑1 TTTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGA > 1:1897708/1‑70 TTTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACG < 1:2868759/67‑1 TTTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAA > 1:2438063/1‑65 TTTTATATTTTTCATATGAATGACTTCCTCAATGG < 1:1411766/35‑1 TTTTATATTTTTCATATGAATGACTTCCTCAATGG < 1:5266664/35‑1 TTTTATATTTTTCATATGAATGACTTCCTCAATGG < 1:2271470/35‑1 TTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAG < 1:3779308/53‑1 TTTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCAGTTCAG < 1:2460/53‑1 TTTATATTTTTCATATGAATGACTTCCT‑AATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACA < 1:3453362/70‑1 TTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACA < 1:476087/70‑1 TTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACA < 1:1823715/70‑1 TTATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACA < 1:3956473/70‑1 TTATATTTTTCATATGAATGACTTCCTCAATGGAG > 1:4561791/1‑35 TATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACA > 1:1932230/1‑69 TATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACA > 1:712777/1‑69 ATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATA > 1:2428235/1‑70 ATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGAC > 1:3742937/1‑67 ATATTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGAC > 1:3749787/1‑67 TTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGC < 1:1487471/71‑1 TTTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGA < 1:3528240/57‑1 TTTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGA > 1:180031/1‑54 TTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGC > 1:3405285/1‑69 TTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGAC > 1:4810666/1‑62 TTTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGAC > 1:1810550/1‑62 TTCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTG > 1:1217131/1‑59 TCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCC < 1:4843520/68‑1 TCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCC < 1:947193/68‑1 TCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCC < 1:5605749/68‑1 TCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCC < 1:4886240/68‑1 TCATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCC < 1:4222153/68‑1 TCATATGAATGACTTCCTCAATGGAGCGCCCTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCC < 1:2689946/68‑1 CATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCC < 1:3574437/67‑1 ATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCCAGGGC < 1:3120933/71‑1 ATATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAA < 1:5608385/52‑1 ||||||| GCTGAATTTTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/932309‑932321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGAATGACTTCCTCAATGGAGCGCCGTTCCCCGTTCAGAAACGCGAGAACGTGACATACTGCCAGGGC < minE/2823597‑2823528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |