| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 183922 = | 60 (0.980) | 8 (0.160) +TTATAACA |
4/82 | NT | 16.8% | intergenic (+8/‑29) | rnhB/dnaE | ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit |
| ? | minE | = 296824 | 35 (0.570) | intergenic (+125/‑28) | cof/ybaO | thiamin pyrimidine pyrophosphate hydrolase/predicted DNA‑binding transcriptional regulator | |||||
CCGAACACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGC > minE/183856‑183989 | ccGAACACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTgtgt > 1:1275787/1‑68 (MQ=255) cGAACACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTc > 1:2371180/1‑68 (MQ=255) cGAACACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCgag < 1:2265963/71‑1 (MQ=255) aaCACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGAt > 1:5188815/1‑71 (MQ=255) acacCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGAtt < 1:4186769/71‑1 (MQ=255) acCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTaa < 1:5247941/71‑1 (MQ=255) tCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTa > 1:1215203/1‑70 (MQ=255) gcgcAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAAcc < 1:1275905/71‑1 (MQ=255) gcgcAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAAcc < 1:3029612/71‑1 (MQ=255) ttGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTaaaa > 1:4440614/1‑61 (MQ=255) ccTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGAt < 1:3209387/71‑1 (MQ=255) cTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATg < 1:3602330/71‑1 (MQ=255) gTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTaa < 1:1429930/52‑1 (MQ=255) gTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTaa < 1:4097263/52‑1 (MQ=255) gTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTaa < 1:2173759/52‑1 (MQ=255) tCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCgaga > 1:5692901/1‑43 (MQ=255) tCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCt > 1:3510243/1‑71 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTg > 1:2099537/1‑70 (MQ=255) aaaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTg < 1:2821615/70‑1 (MQ=255) aaCGCTCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGaa > 1:3433216/1‑71 (MQ=255) aaCGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGaa > 1:4556260/1‑71 (MQ=255) cgcgCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAAc > 1:959383/1‑70 (MQ=255) cgcACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCAc < 1:2104280/71‑1 (MQ=255) gcACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACg < 1:2095203/71‑1 (MQ=255) aCTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGtt > 1:2179651/1‑71 (MQ=255) aCTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGtt > 1:2024607/1‑71 (MQ=255) aCTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGtt > 1:1366486/1‑71 (MQ=255) tGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGt > 1:5506436/1‑68 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGaa > 1:1518840‑M1/25‑46 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGaa > 1:5075803‑M1/25‑46 (MQ=255) gaaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAAt < 1:2783040‑M1/23‑1 (MQ=255) gggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAAt > 1:4641042/1‑46 (MQ=255) gggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGaa > 1:1929260/1‑61 (MQ=255) aaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCg > 1:2381897‑M1/24‑42 (MQ=255) aaaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATCTg > 1:5477462‑M1/24‑49 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAAt > 1:4877924/1‑45 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAAt > 1:2012564/1‑45 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAAt > 1:751676/1‑45 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTc < 1:5664964/69‑1 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:4300857/70‑1 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:1790559/70‑1 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg > 1:4424831/1‑70 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:713210/70‑1 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:3656664/70‑1 (MQ=255) ggACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:2291112/70‑1 (MQ=255) aaataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGAATc < 1:4490896‑M1/24‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTa < 1:1257799‑M1/14‑1 (MQ=255) aataaaattaaaatgttataaGTCGAGATTAAGTAAACCGGa < 1:285945‑M1/21‑1 (MQ=255) aCTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTac < 1:891616/71‑1 (MQ=255) cTGATTCTTGTGTCTAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCgg < 1:2696152/70‑1 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:1642987/59‑1 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:1629068/59‑1 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:671458/59‑1 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:4401958/59‑1 (MQ=255) cTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCggg > 1:3799587/1‑71 (MQ=255) aaatgttataaGTCGAGATTAAGTAAACCGGAATCTGAAGa < 1:2527796‑M1/30‑1 (MQ=255) tGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGa < 1:2232377/37‑1 (MQ=255) tGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGa < 1:205304/47‑1 (MQ=255) tGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGa < 1:1488520/47‑1 (MQ=255) tGAATCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGt > 1:3347011/1‑71 (MQ=255) gATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGa > 1:4347149/1‑39 (MQ=255) gATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTa > 1:1103893/1‑59 (MQ=255) gATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTa > 1:4598684/1‑59 (MQ=255) gATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTa > 1:872249/1‑59 (MQ=255) aTTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTg > 1:1288435/1‑70 (MQ=255) aTTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTg > 1:2518409/1‑70 (MQ=255) aTTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTg > 1:918602/1‑70 (MQ=255) aTTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACAACGTTTCGTACACCTGCGGGTGc < 1:2059423/71‑1 (MQ=255) ttCTTGTGTCGAGATTAAGTAAACCGGAATCTGaa < 1:921454/35‑1 (MQ=255) ttCTTGTGTCGAGATTAAGTAAACCGGAATCTGaa < 1:3561125/35‑1 (MQ=255) tCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTa > 1:4610234/1‑56 (MQ=255) ttGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCg < 1:2527758/52‑1 (MQ=255) tgtgTCGAGATTAAGAAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGAACACCTGCGGGTGCACAGc > 1:2144447/1‑71 (MQ=255) tgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAAc > 1:429957/1‑40 (MQ=255) tgtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAAc > 1:4608402/1‑40 (MQ=255) gtCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGca < 1:3018890/64‑1 (MQ=255) | CCGAACACCATCGGCGCAGCTTTGGGCCTGTCAAACGCGCACTGGGACTTGCGTCCTGATTCTTGTGTCGAGATTAAGTAAACCGGAATCTGAAGATGTCTGAACCACGTTTCGTACACCTGCGGGTGCACAGC > minE/183856‑183989 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |