| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 756354 | 32 (0.520) | 11 (0.190) +CGG |
5/92 | NT | 19.8% | coding (481/702 nt) | lolD | outer membrane‑specific lipoprotein transporter subunit |
| ? | minE | 2228487 = | 63 (1.030) | coding (491/759 nt) | yhdZ | predicted amino‑acid transporter subunit | |||||
TCGTGCGAATCACCGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCTCGATGCGCGTAACGCCGA > minE/756284‑756418 | acGTGCACATCACTACCCTTCCGAACTTTCTGGTGGTCAACAGCAGCGTGTGGCGATTGCCCGCGCGCTgg < 1:1602388/70‑1 (MQ=9) cGTGCACATCACTACCCTTCCGAACTTTCTGGTGGTCAACAGCAGCGTGTGGCGATTGCCCGCGCGCTggc > 1:4738873/1‑70 (MQ=9) aaTCACCGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATaa < 1:295227/71‑1 (MQ=255) aTCACCGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAAc < 1:2119147/71‑1 (MQ=255) tCACCGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAAcc > 1:110642/1‑71 (MQ=255) aCCGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCcg > 1:2491998/1‑71 (MQ=255) ccGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCcgc < 1:2408147/71‑1 (MQ=255) cGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCcgcg > 1:5257174/1‑71 (MQ=255) cGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCcgc > 1:297353/1‑70 (MQ=255) cccATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCTATTGCCCGTCCGCTGGTGAATAACCCGCGcc < 1:747219/71‑1 (MQ=255) cccATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGcc < 1:3835882/71‑1 (MQ=255) tGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGt > 1:4986793/1‑51 (MQ=255) tGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGt > 1:449435/1‑51 (MQ=255) tGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGt > 1:3204423/1‑51 (MQ=255) gAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTgg < 1:2890172/67‑1 (MQ=255) aaCTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGt < 1:5209298/67‑1 (MQ=255) aaCTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGt < 1:5636335/67‑1 (MQ=255) aaCTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGt < 1:4163726/67‑1 (MQ=255) aaCTTTCTGGCGGCGAACGCCAGCCTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTg > 1:1534050/1‑71 (MQ=255) aCTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTgg > 1:4669592/1‑71 (MQ=255) cTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTAc > 1:1533487/1‑67 (MQ=255) cTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGACCGTGCGCTGGTGAATAACCCGCGCCTGGTAc > 1:430245/1‑67 (MQ=255) tCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCgg < 1:5689915/70‑1 (MQ=255) tCTGGCGGCGAACGCCAGCGTGTGGCGATTGACCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGa > 1:920414/1‑71 (MQ=255) gcggcgAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGa < 1:4567061/70‑1 (MQ=255) aCGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCg > 1:3649286/1‑71 (MQ=255) ccAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTa < 1:3328664/71‑1 (MQ=255) cAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGACGAACCTACCGGTaa > 1:1291907/1‑71 (MQ=255) cAGCGTGTGGCGATTGCCCGCGCGCTGGcggtgaagccgaaaatgatgctgtttgatgaaccgacttccgc < 1:402484‑M1/71‑44 (MQ=255) aGCGTGTGGCGATTGCCCGCGCGCTGGcggtgaagccgaaaatgatgctgttt < 1:309163‑M1/53‑27 (MQ=255) gCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTAc > 1:1204247/1‑63 (MQ=255) gtgtGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCTc < 1:5540739/71‑1 (MQ=255) gtgtGGCGATTGCCCGCGCGCTGGcggtgaagccgaaaa < 1:564981‑M1/39‑16 (MQ=255) tgtgGCGATTGCCCGCGCGCTGGcggtgaagccgaa < 1:82610‑M1/36‑14 (MQ=255) tgtgGCGATTGCCCGCGCGCTGGcggtgaagccgaa < 1:1396991‑M1/36‑14 (MQ=255) tgtgGCGATTGCCCGCGCGCTGGcggtgaagccgaa < 1:1703846‑M1/36‑14 (MQ=255) gtgGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCt < 1:4733480/68‑1 (MQ=255) gtgGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCt < 1:1306540/68‑1 (MQ=255) tgGCGATTGCCCGCGCGCTGGcggtgaagccgaaa < 1:4063062‑M1/35‑15 (MQ=255) tgGCGATTGCCCGCGCGCTGGcggtgaagccgaaa < 1:5658675‑M1/35‑15 (MQ=255) gCGATTGCCCGCGCGCTGGcggtgaagccgaaaatgatgctgtttgatgaaccgactt > 1:425317‑M1/1‑19 (MQ=255) cGATTGCCCGCGCGCTGGcggtgaagccgaaaatgatgctgttt < 1:739910‑M1/44‑27 (MQ=255) cGATTGCCCGCGCGCTGGcggtgaagccgaaaatgatgctgttt < 1:3063217‑M1/44‑27 (MQ=255) ttGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCTCGATGCGCGt < 1:1942317/71‑1 (MQ=255) gTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCTCGATGCGCGTAACGcc > 1:1783349/1‑71 (MQ=255) gTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCTCGATGCGCGTAACGcc > 1:5064233/1‑71 (MQ=255) gcgcTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCTCGATGCGCGTAACGCCGa > 1:2387671/1‑71 (MQ=255) cgcTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCTCg > 1:790452/1‑54 (MQ=255) tGGTGAATAACCCGCGCCT‑GTACTGGCGGATGAACCTACCGGTAACCTCGATGCGCGt < 1:2946153/58‑1 (MQ=255) | TCGTGCGAATCACCGCCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTGGTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCTCGATGCGCGTAACGCCGA > minE/756284‑756418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |