| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1587162 | 31 (0.510) | 5 (0.090) | 3/88 | NT | 13.2% | coding (39/1728 nt) | ptsI | PEP‑protein phosphotransferase of PTS system |
| ? | minE | = 1587179 | 38 (0.690) | coding (56/1728 nt) | ptsI | PEP‑protein phosphotransferase of PTS system | |||||
TTAAAAATCAGTCACAAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTCTGCCGACCAGG > minE/1587094‑1587229 | ttAAAAATCAGTCACAAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCgg > 1:5432033/1‑71 (MQ=255)ttAAAAATCAGTCACAAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCg < 1:4519359/70‑1 (MQ=255) acaAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTa < 1:5565785/60‑1 (MQ=255) acaAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGctc > 1:1317447/1‑66 (MQ=255) acaAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCtt < 1:257733/71‑1 (MQ=255) gTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCagaagcagagcttt < 1:517873‑M1/66‑15 (MQ=255) gTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTAagaagcagagcttt < 1:941005‑M1/66‑15 (MQ=255) aaGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCagaagcagagctttac > 1:4952492‑M1/1‑50 (MQ=255) aaGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTga < 1:4322584‑M2/69‑3 (MQ=255) aaGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTga < 1:3449265‑M2/69‑3 (MQ=255) aGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTgaaag > 1:4669896‑M2/1‑66 (MQ=255) aGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTgaaag > 1:3163810‑M2/1‑66 (MQ=255) aGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAagaaga > 1:125097/1‑71 (MQ=255) gggTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGAc < 1:85441/71‑1 (MQ=255) gTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGa < 1:4173259/71‑1 (MQ=255) gTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGa < 1:4018421/71‑1 (MQ=255) aTGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGaaa < 1:3092759/70‑1 (MQ=255) tGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAAtt > 1:4821110/1‑71 (MQ=255) aTTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGa < 1:1901188/65‑1 (MQ=255) aTTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGt < 1:5020630/71‑1 (MQ=255) tCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAaagaa > 1:3726997/1‑57 (MQ=255) aGGCATTTTAGCATCCCCGGGTATCGCTTTCagaagcagagctt < 1:4117507‑M1/44‑14 (MQ=255) aGGCATTTTAGCATCCCCGGGTATCGCTTTCagaagcagagctt < 1:4710888‑M1/44‑14 (MQ=255) aGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTga > 1:5603449‑M2/1‑48 (MQ=255) aGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTga > 1:3398413‑M2/1‑48 (MQ=255) aTTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCg > 1:3586890/1‑71 (MQ=255) aTTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCg > 1:1512247/1‑71 (MQ=255) tttAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGc < 1:4427125/38‑1 (MQ=255) ttAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCt > 1:2008177/1‑41 (MQ=255) ttAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCt > 1:4737404/1‑41 (MQ=255) ttAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCa > 1:1639884/1‑61 (MQ=255) ttAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCa > 1:61901/1‑61 (MQ=255) gCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGaaaaa < 1:1785745/71‑1 (MQ=255) gCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGaaaa < 1:5061521/70‑1 (MQ=255) cATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTg > 1:3684502‑M2/1‑37 (MQ=255) cATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTg > 1:5009447‑M2/1‑37 (MQ=255) cccGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAAttt > 1:2541867/1‑71 (MQ=255) cccGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAAtt < 1:2809727/70‑1 (MQ=255) ccGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTc < 1:4530444/71‑1 (MQ=255) tATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTCTGCCg < 1:4529965/71‑1 (MQ=255) tCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAAt < 1:3486176/40‑1 (MQ=255) tCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAAt < 1:3929945/40‑1 (MQ=255) tCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAAt < 1:861901/40‑1 (MQ=255) tCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTCTGCCGAc > 1:2474825/1‑71 (MQ=255) tCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTCTGCCGAc > 1:2779314/1‑71 (MQ=255) gCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAAt > 1:287435/1‑38 (MQ=255) gCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTCTGCCGAc > 1:588430/1‑69 (MQ=255) cTTTCagaagcagagctttaccgaaagcgatacccggggatgctaaaatgcctgaaatcataaccctacct > 1:4669896‑M1/1‑5 (MQ=255) cTTTCagaagcagagctttaccgaaagcgatacccggggatgctaaaatgcctgaaatcataaccctacct > 1:3163810‑M1/1‑5 (MQ=255) cTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTCTGCCGACCAg < 1:4253186/71‑1 (MQ=255) cTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTCTGCCGACCAg > 1:850077/1‑71 (MQ=255) tttCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTCTGCCGa > 1:4093070/1‑66 (MQ=255) tCagaagcagagctttaccgaaagcgatacccggggatgctaaaatgcctgaaatcataaccctacctt < 1:4322584‑M1/69‑68 (MQ=255) tCagaagcagagctttaccgaaagcgatacccggggatgctaaaatgcctgaaatcataaccctacctt < 1:3449265‑M1/69‑68 (MQ=255) tCagaagcagagctttaccgaaagcgatacccggggatgctaaaatgcct > 1:5603449‑M1/1‑2 (MQ=255) tCagaagcagagctttaccgaaagcgatacccggggatgctaaaatgcct > 1:3398413‑M1/1‑2 (MQ=255) cagaagcagagctttaccgaaagcgatacccggggatg > 1:5009447‑M1/1‑1 (MQ=255) cagaagcagagctttaccgaaagcgatacccggggatg > 1:3684502‑M1/1‑1 (MQ=255) | TTAAAAATCAGTCACAAGTAAGGTAGGGTTATGATTTCAGGCATTTTAGCATCCCCGGGTATCGCTTTCGGTAAAGCTCTGCTTCTGAAAGAAGACGAAATTGTCATTGACCGGAAAAAAATTTCTGCCGACCAGG > minE/1587094‑1587229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |