| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1591595 = | 48 (0.780) | 89 (1.700) +ACATCAA |
27/84 | NT | 69.6% | intergenic (+54/+135) | yfeS/cysM | conserved hypothetical protein/cysteine synthase B |
| ? | minE | 1864319 = | 43 (0.700) | intergenic (+66/+82) | ygcP/ygcQ | predicted anti‑terminator regulatory protein/predicted flavoprotein | |||||
Only 100 of 147 total aligned reads displayed.
CACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCT > minE/1591530‑1591660 | cACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATg > 1:2120219/1‑71 (MQ=255) aaaaTTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATgcggc > 1:475844/1‑71 (MQ=255) aaaTTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:2273374/1‑71 (MQ=255) aaaTTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:1867160/1‑71 (MQ=255) aaaTACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTaaa > 1:3651679/1‑70 (MQ=255) aTACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTTTTTATGCCGGATGCGGCGTAAACGc < 1:1482433/71‑1 (MQ=255) gCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTaaa > 1:644159/1‑63 (MQ=255) gcgtaggcctgataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATaaa < 1:3281216‑M1/15‑1 (MQ=255) gcgtaggcctgataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCtt > 1:530452‑M1/48‑68 (MQ=255) gcgtaggcctgataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCtt > 1:2587739‑M1/48‑68 (MQ=255) gcgtaggcctgataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCtt > 1:257903‑M1/48‑68 (MQ=255) gcgtaggcctgataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATc < 1:3081113‑M1/24‑1 (MQ=255) tttGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:5493286/58‑1 (MQ=255) gtaggcctgataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCg > 1:4184183‑M1/46‑71 (MQ=255) ataggcctgataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGc > 1:1068605‑M1/46‑63 (MQ=255) tGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTaaa > 1:4488942/1‑58 (MQ=255) aggcctgataagacgcggcaagcgtcgcatcaggcgttgatgtCGGATGCGGCGTa > 1:116615‑M1/44‑56 (MQ=255) aggcctgataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAAc < 1:2674530‑M1/16‑1 (MQ=255) aggcctgataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAAc < 1:4449442‑M1/16‑1 (MQ=255) aggcctgataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAAc < 1:5605964‑M1/16‑1 (MQ=255) ggcctgataagacgcggcaagcgtcgcatcaggcgttgatgtCGGATGCGGCGTAAACGCCTTAtccgacc < 1:4076012‑M1/29‑4 (MQ=255) ggcctgataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTAtccgacc < 1:4881947‑M1/29‑4 (MQ=255) gTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGc < 1:2131209/70‑1 (MQ=255) ggCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc < 1:4785641/71‑1 (MQ=255) ctgataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATgcg > 1:5136755‑M1/40‑47 (MQ=255) ctgataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTa < 1:41480‑M1/31‑1 (MQ=255) ctgataagacgcggcaagcgtcgcatcaggcgttgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTa < 1:2746008‑M1/31‑1 (MQ=255) ctgataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTAc > 1:2185675‑M1/40‑71 (MQ=255) tgataagacgcggcaagcgtcgcatcaggcgttgatgtCGGATGCGGCGt > 1:4434130‑M1/39‑50 (MQ=255) tgataagacgcggcaagcgtcgcatcaggcgttgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 1:2792159‑M1/32‑1 (MQ=255) tgataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTAc > 1:4427802‑M1/39‑70 (MQ=255) tagcaACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCgg < 1:604370/39‑1 (MQ=255) gataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACa < 1:1148611‑M1/33‑1 (MQ=255) gataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACa < 1:2192035‑M1/33‑1 (MQ=255) gataagacgcggcaagcgtctcatcaggcgttgatgtCGGATGCGGCGTAAACGCCTTATCCg > 1:146277‑M1/38‑63 (MQ=255) gataagacgcggcaagcgtcgcatcaggcgttgatgtCGGATGCGGCGTa > 1:3476384‑M1/38‑50 (MQ=255) ataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACaa < 1:1293882‑M1/34‑1 (MQ=255) ataagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACaa < 1:4676571‑M1/34‑1 (MQ=255) ataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTGTCCGACCTACa > 1:1598038‑M1/37‑69 (MQ=255) ataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACaa < 1:4663289‑M1/34‑1 (MQ=255) ataagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACa > 1:3968541‑M1/37‑69 (MQ=255) taagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTAc > 1:2505612‑M1/36‑67 (MQ=255) taagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACaaaa < 1:5462559‑M1/36‑1 (MQ=255) aagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACaaaa < 1:3316933‑M1/36‑1 (MQ=255) aagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAAt < 1:3698561‑M1/37‑1 (MQ=255) aagacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAAt < 1:1652032‑M1/37‑1 (MQ=255) aagacgcggcaagcgtcgcatcaggcgttgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAAt < 1:5355782‑M1/37‑1 (MQ=255) aagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAAt < 1:701828‑M1/37‑1 (MQ=255) aagacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAAt < 1:4347264‑M1/37‑1 (MQ=255) agacgcggcaagcgtcgcatcaggcgttgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATc > 1:455065‑M1/34‑71 (MQ=255) agacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCg > 1:2936739‑M1/34‑59 (MQ=255) agacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCg > 1:146894‑M1/34‑59 (MQ=255) aacaacTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATc > 1:1993540/1‑71 (MQ=255) aacaacTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATc > 1:4471248/1‑71 (MQ=255) gacgcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAAtca < 1:2919820‑M1/39‑2 (MQ=255) gacgcggcaagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAAtca < 1:2232205‑M1/39‑2 (MQ=255) acaacTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTa < 1:4865689/54‑1 (MQ=255) aacTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:3263682/43‑1 (MQ=255) gcgttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATaaa < 1:3716734‑M1/15‑1 (MQ=255) acTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:1506456/42‑1 (MQ=255) acTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:4041016/42‑1 (MQ=255) cTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACg < 1:3071542/45‑1 (MQ=255) ttaagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACaaaa > 1:670278‑M1/27‑62 (MQ=255) gTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTaa > 1:3292707/1‑71 (MQ=255) ttAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGc > 1:235094/1‑67 (MQ=39) ttAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTaa < 1:2770226/70‑1 (MQ=255) ttAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAAt > 1:4599416/1‑71 (MQ=255) caagcgtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCtaaa < 1:4873076‑M1/46‑2 (MQ=255) tAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAAtt > 1:2474244/1‑71 (MQ=40) aagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCtaaa > 1:2446982‑M1/25‑69 (MQ=255) aagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCtaaa > 1:3968611‑M1/25‑69 (MQ=255) aagcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCtaaa > 1:2920001‑M1/25‑69 (MQ=255) agcgtcgcatcaggcgttgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCtaaa < 1:2228188‑M1/46‑2 (MQ=255) agcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACgctaaatc > 1:4238166‑M1/24‑68 (MQ=255) agcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGctaaat < 1:2089850‑M1/47‑3 (MQ=255) agcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGctaaat < 1:2082957‑M1/47‑3 (MQ=255) aaaaaaGTGCGCTTTGTTTATGCCGGATGCGGCGTaaa > 1:1110437/1‑38 (MQ=40) aaaaaaGTGCGCTTTGTTTATGCCGGATGCGGCGTaaa > 1:3048296/1‑38 (MQ=40) gcgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAATCa > 1:655331‑M1/23‑71 (MQ=255) aaaaaGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCa < 1:2427778/71‑1 (MQ=38) aaaaaGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCa < 1:3609408/71‑1 (MQ=38) cgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAATcag > 1:187267‑M1/22‑70 (MQ=255) cgtcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAATcag > 1:5546817‑M1/22‑70 (MQ=255) gtcgcatcaggcattgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAAtcagg < 1:1299606‑M1/51‑3 (MQ=255) tcgcatcaggcgttgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGctaaat > 1:3391076‑M1/20‑64 (MQ=255) tcgcatcaggcgttgatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAatcaggc > 1:3504489‑M1/20‑68 (MQ=255) tcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACGTACAAAATCACGCTAAatcaggc < 1:3454996‑M1/52‑4 (MQ=255) tcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAatcaggc > 1:5118810‑M1/20‑68 (MQ=255) tcgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAatcagga > 1:1080715‑M1/20‑68 (MQ=255) cgcatcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGctaaat > 1:754138‑M1/19‑63 (MQ=255) catcaggcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAATCa < 1:3876066‑M1/49‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATAtt > 1:1995596/1‑71 (MQ=39) gcgttgatgtCGGATGCGGCATAAACGCCTTATCCGACCTACAAAATCACGCTAAATcag > 1:3826488‑M1/11‑59 (MQ=255) gTTTATGCCGGATTCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTc < 1:3353321/56‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCAGaat > 1:2029427/1‑70 (MQ=11) gTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTc < 1:2608126/56‑1 (MQ=35) tATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCt > 1:2820729/1‑71 (MQ=255) tATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGaaatc < 1:4377490/70‑3 (MQ=11) gatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATcag < 1:4317859‑M1/50‑2 (MQ=255) gatgtCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCACGCTAAATcag < 1:228643‑M1/50‑2 (MQ=255) | CACGAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCT > minE/1591530‑1591660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |