| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1885553 = | 65 (1.060) | 3 (0.060) | 3/84 | NT | 5.6% | coding (1015/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| ? | minE | 1885574 = | 45 (0.860) | coding (1036/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY | |||||
Only 100 of 112 total aligned reads displayed.
GCCTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGA > minE/1885485‑1885623 | gCCTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCaaa > 1:3222771/1‑70 (MQ=255) gtgggaatggaatactttccagaatcagcttacctgcttccagtttcgagaagtcgagaacatcattaat < 1:4273158‑M1/3‑1 (MQ=255) gtgggaatggaatactttccagaatcagcttacctgcttccagtttcgagaagtcgagaacatcattaat < 1:1292145‑M1/3‑1 (MQ=255) gtgggaatggaatactttccagaatcagcttacctgcttccagtttcgagaagtcgagaacatcattaat > 1:336150‑M1/68‑70 (MQ=255) ccTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAaata < 1:180333/71‑1 (MQ=255) ccTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAaata < 1:1691308/71‑1 (MQ=255) cTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAaataa < 1:3598410/71‑1 (MQ=255) cTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAaataa > 1:4023208/1‑71 (MQ=255) cTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAaataa < 1:583604/71‑1 (MQ=255) ggaatggaatactttccagaatcagcttacctgcttccagtttcgagaagtcgagaacatcattAATAAtt > 1:3292352‑M1/65‑71 (MQ=255) ggaatggaatactttccagaatcagcttacctgcttccagtttcgagaagtcgagaacatcattAATAAtt > 1:1277586‑M1/65‑71 (MQ=255) ggaatggaatactttccagaatcagcttacctgcttccagtttcgagaagtcgagaacatcattAATAAtt > 1:1905184‑M1/65‑71 (MQ=255) ggaatggaatactttccagaatcagcttacctgcttccagtttcgagaagtcgagaacatcattAATAAtt > 1:4051856‑M1/65‑71 (MQ=255) gACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAAtt > 1:3224832/1‑71 (MQ=255) gACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAAtt > 1:1495825/1‑71 (MQ=255) aCGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAAttt > 1:442225/1‑71 (MQ=255) aCGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAAttt > 1:1250154/1‑71 (MQ=255) aCGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAAttt < 1:2398044/71‑1 (MQ=255) cGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTg < 1:5535945/71‑1 (MQ=255) ggaatactttccagaatcagcttacctgcttccagtttcgagaagtcgagaacatgattaat > 1:10706‑M1/60‑62 (MQ=255) aaaaCAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGc < 1:836865/71‑1 (MQ=255) aaaaCAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCAgg > 1:5405382/1‑70 (MQ=255) aaaCAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTgg > 1:5262515/1‑69 (MQ=255) aaCAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCaa > 1:5611827/1‑71 (MQ=255) aaCAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCaa > 1:3478559/1‑71 (MQ=255) aaCAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCaa > 1:5069112/1‑71 (MQ=255) ccagaatcagcttacctgcttccagtttcgagaagtcgagaacatcattAATAATTTGCTGGCAattatt > 1:3136836‑M1/50‑70 (MQ=255) acacCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAatga < 1:4837621/71‑1 (MQ=255) acacCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAatga < 1:4680131/71‑1 (MQ=255) aatcagcttaccttcttccagtttcgagaagtcgagaacatcattaataa > 1:3327166‑M1/46‑50 (MQ=255) aatcagcttacctgcttccagtttcgagaagtcgagaacatcattaataa > 1:4498077‑M1/46‑50 (MQ=255) aatcagcttacctgcttccagtttcgagaagtcgagaacatcattaataa > 1:880194‑M1/46‑50 (MQ=255) cacCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCaaa > 1:2042456/1‑46 (MQ=255) cacCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCaaa > 1:5265946/1‑46 (MQ=255) cacCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCaaa > 1:151767/1‑46 (MQ=255) ccAACGCAGCGCGATCACCTGAATACGATTGAACTTTCGGCAaataat < 1:2635525/48‑1 (MQ=255) ccAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAaataat < 1:472487/48‑1 (MQ=255) ccAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAaataat < 1:4577626/48‑1 (MQ=255) ccAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAaataat < 1:789151/48‑1 (MQ=255) cAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGtt > 1:4582517/1‑71 (MQ=255) cAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGtt > 1:2894879/1‑71 (MQ=255) agcttacctgcttccagtttcgagaagtcgagaacatcattAATAATTTGCTGGc > 1:5219515‑M1/42‑55 (MQ=255) aCGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTtct < 1:3836383/71‑1 (MQ=255) tacctgcttccagtttcgagaagtcgagaacatcattaataa < 1:3021206‑M1/5‑1 (MQ=255) gCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTtctc > 1:2555097/1‑70 (MQ=255) acctgcttccagtttcgagaagtcgagaacatcattaat > 1:4106766‑M1/37‑39 (MQ=255) aGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAat < 1:5515205/59‑1 (MQ=255) aGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGAc < 1:3295493/71‑1 (MQ=255) aGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGAc < 1:3904782/71‑1 (MQ=255) gcgcGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACt > 1:2876467/1‑71 (MQ=255) cgcgATCACCTGAATACGATTGAACGTTCGGCAaata < 1:1323192/37‑1 (MQ=255) cgcgATCACCTGAATACGATTGAACGTTCGGCAaata < 1:5391226/37‑1 (MQ=255) cgcgATCACCTGAATACGATTGAACGTTCGGCAaata < 1:4912836/37‑1 (MQ=255) gcgATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTtc > 1:2094639/1‑71 (MQ=255) cgATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTtct < 1:440451/71‑1 (MQ=255) tccagtttcgagaagtcgagaacatcattAATAATTTGCTGGCaa > 1:4167224‑M1/30‑45 (MQ=255) aTCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTtctc > 1:1703077/1‑70 (MQ=255) tCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGa < 1:3495101/71‑1 (MQ=255) tCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGa < 1:2767836/71‑1 (MQ=255) tCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGa < 1:3192527/71‑1 (MQ=255) tGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAatta > 1:2369096/1‑42 (MQ=255) tGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAat < 1:473862/40‑1 (MQ=255) tGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAat < 1:2566100/40‑1 (MQ=255) gAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAat > 1:4303969/1‑39 (MQ=255) gAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTaa > 1:1851630/1‑45 (MQ=255) gAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTg > 1:2880822/1‑70 (MQ=255) gAATACGATTGAACGTTCGGCAAATAATTTGCTGGAAATTATTAATGATGTTCTCGACTtctc < 1:5375659/63‑1 (MQ=255) aaTACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGt > 1:2300643/1‑50 (MQ=255) aaTACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGt < 1:158643/50‑1 (MQ=255) aaTACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTgg > 1:3793492/1‑70 (MQ=255) tACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAat > 1:4308054/1‑43 (MQ=255) tACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACtt < 1:5358088/57‑1 (MQ=255) tACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAg > 1:2597040/1‑71 (MQ=255) cGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCg > 1:1121090/1‑59 (MQ=255) cGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAg > 1:1906542/1‑69 (MQ=255) cGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGc < 1:1161237/70‑1 (MQ=255) gATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAg < 1:364808/71‑1 (MQ=255) gATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACAGGaa > 1:5644133/1‑67 (MQ=255) aTTGAACGTTCGGCAAATAATTTGCTGGCAattatt < 1:5181002/36‑1 (MQ=255) tGAACGTTCGGCAAATAATTTGCTGGCAATTATTAat < 1:642337/37‑1 (MQ=255) tGAACGTTCGGCAAATAATTTGCTGGCAATTATTAat < 1:1987053/37‑1 (MQ=255) gAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTa < 1:2638318/70‑1 (MQ=255) aaCGTTCGGCAAATAATTTGCTGGCAATTATTAat < 1:229400/35‑1 (MQ=255) aaCGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTtct > 1:2046988/1‑51 (MQ=255) aaCGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTaa < 1:2309134/70‑1 (MQ=255) ttCGGCAAATAATTTGCTGGCAATTATTAATGATGtt < 1:2475084/37‑1 (MQ=255) ttCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGa > 1:1304598/1‑71 (MQ=255) tCGGCAAATAATTTGCTGGCAATTATTAATGATGtt < 1:5118902/36‑1 (MQ=255) cGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAg > 1:2015370/1‑65 (MQ=255) cGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGAtt > 1:3559923/1‑71 (MQ=255) ggCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGAtt < 1:3861639/70‑1 (MQ=255) gCAAATTATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCt > 1:738631/1‑71 (MQ=255) cAAATAATTTGCTTGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTg < 1:3404818/71‑1 (MQ=255) cAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTg > 1:3578572/1‑71 (MQ=255) aaaTAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTg > 1:4581430/1‑70 (MQ=255) AATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTgg < 1:2110241‑M1/70‑1 (MQ=255) AATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGa > 1:4054848‑M1/1‑71 (MQ=255) AATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGa > 1:1178986‑M1/1‑71 (MQ=255) AATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGa > 1:1612371‑M1/1‑71 (MQ=255) AATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGa > 1:2631689‑M1/1‑71 (MQ=255) | GCCTGACGCTGAAAACAGAATTAACACCAACGCAGCGCGATCACCTGAATACGATTGAACGTTCGGCAAATAATTTGCTGGCAATTATTAATGATGTTCTCGACTTCTCGAAACTGGAAGCAGGTAAGCTGATTCTGGA > minE/1885485‑1885623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |