| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 223037 | 66 (1.080) | 31 (0.760) +TAGCACTGCCACGTAT |
11/66 | NT | 50.0% | intergenic (+92/‑88) | lpcA/prfH | D‑sedoheptulose 7‑phosphate isomerase/predicted peptide chain release factor |
| ? | minE | 1019195 = | 27 (0.440) | intergenic (+144/+82) | ydgA/uidC | conserved hypothetical protein/predicted outer membrane porin protein | |||||
CGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTC > minE/1019129‑1019262 | cGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTa > 1:1718964/1‑71 (MQ=255)cGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTa < 1:32767/71‑1 (MQ=255)cGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTa < 1:4514223/71‑1 (MQ=255) cAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCa > 1:1883038/1‑71 (MQ=255) cctatgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGtt < 1:1427658‑M2/3‑1 (MQ=255) aGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCa < 1:3862038/70‑1 (MQ=255) ggCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATc < 1:375461/71‑1 (MQ=255) ggCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATc < 1:2845017/71‑1 (MQ=255) ctatgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTa > 1:314186‑M2/58‑62 (MQ=255) ctatgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTa > 1:875263‑M2/58‑62 (MQ=255) ctatgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATc < 1:4228679‑M2/14‑1 (MQ=255) ctatgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATc < 1:1437379‑M2/14‑1 (MQ=255) tatgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATcc > 1:2101907‑M2/57‑71 (MQ=255) tatgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATcc > 1:1903227‑M2/57‑71 (MQ=255) tatgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATcc > 1:1004805‑M2/57‑71 (MQ=255) atgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATc > 1:1415165‑M2/56‑69 (MQ=255) atgcctgatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATc > 1:2946535‑M2/56‑69 (MQ=255) cTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCgg > 1:2754390/1‑71 (MQ=255) tACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTAcgtcgc < 1:4775957/64‑1 (MQ=255) tACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTAcgccgc < 1:3032851/64‑1 (MQ=255) aCCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGtt < 1:928752/55‑1 (MQ=255) aCCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCa > 1:4171515/1‑71 (MQ=255) cTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGtt < 1:3410222/53‑1 (MQ=255) cTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATa < 1:2408845/71‑1 (MQ=255) gatgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGtt < 1:5660260‑M2/3‑1 (MQ=255) gatgcgacgctgaagcgtcttatcaagcctacatagcactgccacgtatGTTTACACCGCATCCGGCATa > 1:818729‑M2/50‑70 (MQ=255) tttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTa > 1:851274/1‑53 (MQ=255) atgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaa < 1:713490‑M2/22‑1 (MQ=255) ttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGtt < 1:664520/50‑1 (MQ=255) ttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTa > 1:1954455/1‑52 (MQ=255) ttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTa > 1:582959/1‑52 (MQ=255) tgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaa < 1:4048171‑M2/22‑1 (MQ=255) tgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaa < 1:2048094‑M2/22‑1 (MQ=255) tgcgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaa < 1:2484138‑M2/22‑1 (MQ=255) tCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATaaaa < 1:1845442/70‑1 (MQ=255) cgacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCAtaaaaac < 1:274881‑M2/26‑2 (MQ=255) ccTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATaaaa < 1:4027220/69‑1 (MQ=255) gacgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCataaaaaca > 1:1857692‑M2/45‑69 (MQ=255) cTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑Ac < 1:5511288/71‑1 (MQ=255) cTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑Ac < 1:1111320/71‑1 (MQ=255) acgctgaagcgtcttatcatgcctacatagcactgccacgtatg < 1:1429198‑M2/1‑1 (MQ=255) acgctgaagcgtcttatcatgcctacatagcactgccacgtatg < 1:769342‑M2/1‑1 (MQ=255) acgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGcataaaaacac < 1:2096420‑M2/28‑4 (MQ=255) acgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaaaaa < 1:3098024‑M2/25‑1 (MQ=255) acgctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaaaaa < 1:1281470‑M2/25‑1 (MQ=255) ctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTa < 1:5457551‑M2/5‑1 (MQ=255) ctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTa < 1:433358‑M2/5‑1 (MQ=255) ctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaaa < 1:2391419‑M2/23‑1 (MQ=255) ctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaaa < 1:1279892‑M2/23‑1 (MQ=255) ctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATAAAAACAcgcg < 1:4858968‑M2/31‑1 (MQ=255) ctgaagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATAAAAACAcgcg < 1:3770558‑M2/31‑1 (MQ=255) acacTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCa > 1:1026075/1‑71 (MQ=255) cacTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGtt < 1:174617/41‑1 (MQ=255) cacTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGtt < 1:4126928/41‑1 (MQ=255) cacTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGtt < 1:1452118/41‑1 (MQ=255) cacTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCAc < 1:829182/71‑1 (MQ=255) aagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATAAAAACACGCGCa < 1:4692444‑M2/33‑1 (MQ=255) aagcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATAAAAACACGCGCAc > 1:774384‑M2/38‑71 (MQ=255) cTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCa < 1:4097776/48‑1 (MQ=255) cTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCa < 1:1365159/48‑1 (MQ=255) agcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATAAAAACACGCGCAc < 1:3150977‑M2/34‑1 (MQ=255) tttGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACttt > 1:3941050/1‑71 (MQ=255) gcgtcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATAAAAACACGCGCACtt > 1:1562269‑M2/36‑71 (MQ=255) ttGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCa > 1:2617432/1‑46 (MQ=255) tGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATaaaa < 1:3349831/57‑1 (MQ=255) tGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTg < 1:1034573/70‑1 (MQ=255) tcttatcatgcctacatagcactgccacgtatGTTTTCACCGCATCCGGCAtat < 1:208239‑M2/22‑2 (MQ=255) tcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaaa < 1:1078565‑M2/23‑1 (MQ=255) tcttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATaaa < 1:5660959‑M2/23‑1 (MQ=255) cttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATAAAAACACGCGCACTTTg > 1:4855398‑M2/32‑69 (MQ=255) ttatcatgcctacatagcactgccacgtatGTTTaca > 1:4214843‑M2/31‑36 (MQ=255) ttatcatgcctacatagcactgccacgtatGTTTACACCGCATCCGGCATAAAAACACGCGCACtttgcta > 1:5651377‑M2/31‑68 (MQ=255) tATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTGTcaacaa > 1:4326407/1‑71 (MQ=255) aGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACtt < 1:687423/58‑1 (MQ=255) aGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTGTCAACAATCt > 1:5362425/1‑70 (MQ=255) gTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTGTCAACAATCTGa < 1:5690720/71‑1 (MQ=255) tttttGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTg < 1:3932357/58‑1 (MQ=255) catagcactgcaacgtatGTTTACACCGCATCCGGCataaaaaca > 1:194876‑M2/19‑43 (MQ=255) atagcactgccacgtatGTTTACACCGCATCCGGCATaaa < 1:5174100‑M2/23‑1 (MQ=255) atagcactgccacgtatGTTTACACCGCATCCGGCATaaa < 1:1356576‑M2/23‑1 (MQ=255) tagcactgccacgtatGTTTACACCGCATCCGGCATaaaaa > 1:4103816‑M2/17‑41 (MQ=255) agcactgccacgtatGTTTACACCGCATCCGGCATaaaaa > 1:781077‑M2/16‑40 (MQ=255) agcactgccacgtatGTTTACACCGCATCCGGCATaaaaa > 1:462448‑M2/16‑40 (MQ=255) agcactgccacgtatGTTTACACCGCATCCGGCATaaaaa > 1:1712395‑M2/16‑40 (MQ=255) agcactgccacgtatGTTTACACCGCATCCGGCATaaaaa > 1:1438687‑M2/16‑40 (MQ=255) gcactgccacgtatGTTTACACCGCATCCGGCataaaaaca > 1:1837029‑M2/15‑39 (MQ=255) gcactgccacgtatGTTTACACCGCATCCGGCataaaaaca > 1:2988740‑M2/15‑39 (MQ=255) ctgccacgtatGTTTACACCGCATCCGGCATAAAAACACGCGCACTTtgc < 1:2442155‑M2/39‑2 (MQ=255) gATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTGTCAACAATCTGAAACGCCGGAGAttt > 1:4011657/1‑71 (MQ=255) aGGCGTTTACGCCGCATCCGTCATAAAAA‑ACGCGCACTTTGTCAACAATCTGa < 1:5426096/53‑1 (MQ=255) ggCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTtctc < 1:1972496/71‑1 (MQ=255) | CGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAA‑ACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTC > minE/1019129‑1019262 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |