| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 834,803 | C→T | 19.7% | L1087L (CTC→CTT) | narG → | nitrate reductase 1, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 834,803 | 0 | C | T | 19.7% | 123.0 / 22.4 | 61 | L1087L (CTC→CTT) | narG | nitrate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (32/16); new base T (4/8); total (37/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
ATCGACACCCGTTCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACCTGCTGATGCT > minE/834738‑834868 | aTCGACACCCGTTCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACtt < 1:1290384/71‑1 (MQ=255) tCGACACCCGTTCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTc > 1:3964320/1‑71 (MQ=255) cacCCGTTCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGa > 1:2512077/1‑71 (MQ=255) cGTTCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGAcgcc > 1:1942171/1‑71 (MQ=255) ttCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGAcgccg > 1:1860830/1‑70 (MQ=255) tCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCaa < 1:646229/56‑1 (MQ=255) tCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCaa < 1:4653643/56‑1 (MQ=255) tCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCaa < 1:4660310/56‑1 (MQ=255) tGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAg < 1:3783649/71‑1 (MQ=255) aaggaagTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAg > 1:2448961/4‑69 (MQ=255) aaaGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCaa > 1:1140262/1‑50 (MQ=255) aaaGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAg > 1:4116286/1‑69 (MQ=255) aaaGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAg > 1:5163039/1‑69 (MQ=255) aaaGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAg > 1:2099681/1‑69 (MQ=255) agaagTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCt > 1:5091367/1‑54 (MQ=255) agaagTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGaa > 1:2419018/1‑69 (MQ=255) agaagTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGa > 1:5003297/1‑68 (MQ=255) aagTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCT‑AACTTCCTGACGCCGCACCAGAAGTggg > 1:4676859/1‑71 (MQ=255) gTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGAcgccgc > 1:2202719/1‑58 (MQ=255) gTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTgggg < 1:13723/71‑1 (MQ=255) gTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTgggg < 1:1587241/71‑1 (MQ=255) cAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtccactc > 1:2093182/1‑71 (MQ=255) aTCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCAcc > 1:4653409/1‑70 (MQ=255) cAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTa > 1:5375499/1‑69 (MQ=255) aaCGGCTTCCCGGAAAAAGCACTTAACTTCCTGACGCCGCACCAGAAATggggca < 1:173406/55‑3 (MQ=255) cGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAg > 1:2368751/1‑69 (MQ=255) cGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGc > 1:4637303/1‑70 (MQ=255) ggCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGa > 1:2051331/1‑71 (MQ=255) cAACCAGGAAAAAGCGCTCAACTTTCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACa < 1:3852092/71‑1 (MQ=255) aaCCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACa < 1:2695136/70‑1 (MQ=255) ccggAAAAAGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTACAGTGAAAAcc < 1:4368715/68‑1 (MQ=255) cAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACaa > 1:1402299/1‑68 (MQ=255) cggAAAAAGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTACAGTGAAAAc < 1:189225/67‑1 (MQ=255) cggAAAAAGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTACAGTGAAAAc < 1:3157486/67‑1 (MQ=255) cggAAAAAGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTACAGTGAAAAc < 1:567457/67‑1 (MQ=255) aGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACctg > 1:3144394/1‑71 (MQ=255) gAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtcca > 1:2401833/1‑47 (MQ=255) gAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACctgct < 1:916451/71‑1 (MQ=255) gAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACctgct < 1:1125150/71‑1 (MQ=255) gAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACctgct < 1:3603640/71‑1 (MQ=255) gAAAAAGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTAGAGTGAAAACct > 1:2600314/1‑68 (MQ=255) gAAAAAGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTACAgtg < 1:2542890/61‑3 (MQ=255) aaaaGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACCtgctga > 1:4887880/1‑71 (MQ=255) aaaGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCAttcact > 1:2436063/1‑46 (MQ=21) aaaGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTACAGTGAAAACCtgctaat > 1:4634689/1‑71 (MQ=255) aaGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtc < 1:666464/41‑1 (MQ=255) aaGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTACAGTGAAAACCtgctaatg < 1:3896675/71‑1 (MQ=255) aaGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTACAGTGAAAACCtgctaatg < 1:5477393/71‑1 (MQ=255) aGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtcca > 1:4597606/1‑42 (MQ=255) aGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtcca > 1:1472731/1‑42 (MQ=255) aGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtcca > 1:3706156/1‑42 (MQ=255) aGCACTTAACTTCCTGACGCCGCACCAGAAATGGGGCATTCACTCAACCTACAGTGAAAACCtgctaatgc > 1:305566/1‑71 (MQ=255) gcgcTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtccactccac > 1:1098225/1‑47 (MQ=255) gcgcTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtccactccac > 1:839167/1‑47 (MQ=255) gcgcTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtccactccac > 1:5217717/1‑47 (MQ=255) gcgcTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtccactccac > 1:5211438/1‑47 (MQ=255) gcgcTCAACTTCCTGACGCCGCACCAGAAGTGGGGTAtccactcca > 1:1030869/1‑46 (MQ=255) gcgcTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACCtgctgatgct < 1:4230928/71‑1 (MQ=255) gcgcTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACCtgctgatgct < 1:778149/71‑1 (MQ=255) gcgcTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACCtgctgatgct < 1:3647857/71‑1 (MQ=255) cgcTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACCtgctgatgct > 1:3873271/1‑70 (MQ=255) | ATCGACACCCGTTCGGTGAAAGAAGTGATAGGCCAGAAATCCAACGGCAACCAGGAAAAAGCGCTCAACTTCCTGACGCCGCACCAGAAGTGGGGTATCCACTCCACCTACAGCGACAACCTGCTGATGCT > minE/834738‑834868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |