| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,015,610 | A→G | 16.2% | D153D (GAT→GAC) | fumA ← | aerobic Class I fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,015,610 | 0 | A | G | 16.2% | 148.8 / 20.6 | 68 | D153D (GAT→GAC) | fumA | aerobic Class I fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base A (32/25); new base G (6/5); total (38/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.68e-01 | |||||||||||
GTCGCCATCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACCGCGCGCCAGCG > minE/1015541‑1015680 | gtcgCCATCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACatat < 1:1752028/71‑1 (MQ=255) aTCAACGGCATAATGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAgcg < 1:963476/71‑1 (MQ=255) aaCGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAgcggcg > 1:4497177/1‑71 (MQ=255) aaCGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAgcggcg > 1:4405777/1‑71 (MQ=255) aaCGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAgcggcg > 1:1751716/1‑71 (MQ=255) aaCGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAgcggcg > 1:2116629/1‑71 (MQ=255) aaCGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAgcggc > 1:2999858/1‑70 (MQ=255) cATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGttt < 1:4754688/71‑1 (MQ=255) aTAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGtttt < 1:2929639/71‑1 (MQ=255) aTAAAGATCGATCTGCGCTGGCAAGTTGGTGCCGGTATTCACCTCTTTATACATATCCAGCGGCGCGtttt > 1:5242443/1‑71 (MQ=255) tAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGtttt > 1:1929062/1‑70 (MQ=255) aaGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACatat > 1:1238145/1‑53 (MQ=255) aaGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGc > 1:1177020/1‑70 (MQ=255) aaGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGc > 1:3881137/1‑70 (MQ=255) aGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGc > 1:497651/1‑69 (MQ=255) aGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGc > 1:4381132/1‑69 (MQ=255) atcgatcTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGt < 1:2303055/71‑1 (MQ=255) cgcTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGa > 1:4642723/1‑70 (MQ=255) cgcTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGa < 1:3757661/70‑1 (MQ=255) cgcTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGAt > 1:4709590/1‑71 (MQ=255) gcTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGAtt < 1:465080/71‑1 (MQ=255) gcTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGAtt < 1:4079060/71‑1 (MQ=255) gcTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGAtt < 1:3908554/71‑1 (MQ=255) gCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCt < 1:1982053/71‑1 (MQ=255) aGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGttt < 1:2697873/48‑1 (MQ=255) aGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAg < 1:1692001/62‑1 (MQ=255) ttGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGat < 1:2594335/71‑1 (MQ=255) ggTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTg > 1:4238739/1‑45 (MQ=255) agTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGata < 1:3778340/69‑1 (MQ=255) gTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGatat < 1:3461270/70‑1 (MQ=255) gTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGatat < 1:4143419/70‑1 (MQ=255) gTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGata > 1:5581302/1‑69 (MQ=255) gTGCCGGTGGTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGatat < 1:3454570/70‑1 (MQ=255) gTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGatat < 1:3564154/70‑1 (MQ=255) gTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGatat < 1:1775278/70‑1 (MQ=255) ggTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGata > 1:534164/1‑64 (MQ=255) ggTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGata > 1:1171213/1‑64 (MQ=255) ggTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGATATAGgtgt < 1:4440195/71‑1 (MQ=255) gTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTc < 1:2761376/59‑1 (MQ=255) gTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGtt < 1:4724312/71‑1 (MQ=255) aTTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGa > 1:1563653/1‑39 (MQ=255) aTTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTa > 1:171411/1‑52 (MQ=255) ttCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTtata < 1:5054075/71‑1 (MQ=255) tCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGtt > 1:294279/1‑67 (MQ=255) cACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTc > 1:5493322/1‑54 (MQ=255) cACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGa > 1:2754096/1‑71 (MQ=255) cACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGa > 1:609669/1‑71 (MQ=255) cACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGa > 1:1504845/1‑71 (MQ=255) cttcttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCtt > 1:2849303/1‑51 (MQ=255) cttcttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGAtata < 1:5037207/58‑1 (MQ=255) cttTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGATATAGGTGTTATAGACGcct > 1:3645695/1‑70 (MQ=255) cttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGa > 1:5226723/1‑41 (MQ=255) cttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGa > 1:5193590/1‑41 (MQ=255) cttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGa > 1:5365871/1‑41 (MQ=255) cttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGa > 1:5372689/1‑41 (MQ=255) cttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGa > 1:5617610/1‑41 (MQ=255) cttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTAt > 1:1919862/1‑45 (MQ=255) cttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTAt > 1:1387125/1‑45 (MQ=255) cttTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTAt > 1:3926092/1‑45 (MQ=255) tataCATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACcgc < 1:4172446/69‑1 (MQ=255) tataCATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACcgc < 1:1219466/69‑1 (MQ=255) gtaCATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGata > 1:99921/2‑49 (MQ=255) gtaCATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGata > 1:3952652/2‑49 (MQ=255) taCATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACCgcgcgc > 1:4243451/1‑71 (MQ=255) aCATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGAtata < 1:301726/49‑1 (MQ=255) aCATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGtt < 1:5163592/55‑1 (MQ=255) aCATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGtt < 1:931394/55‑1 (MQ=255) aCATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGtt < 1:3652130/55‑1 (MQ=255) aCATATCCAGCGGCGCGTTTTGCGACTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACCgcgcgc > 1:3526384/1‑70 (MQ=255) cATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACCGCGCGCCa < 1:4582949/71‑1 (MQ=255) atCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTc > 1:3748015/1‑39 (MQ=255) atCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGatat < 1:4993292/44‑1 (MQ=255) atCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGatat < 1:1678795/44‑1 (MQ=255) atCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACCGCGCGCCAgcg > 1:3766262/1‑71 (MQ=255) | GTCGCCATCAACGGCATAAAGATCGATCTGCGCTGGCAGATTGGTGCCGGTATTCACTTCTTTATACATATCCAGCGGCGCGTTTTGCGAGTAGCGCAGATTATCTTCGATATAAGTGTTATAGACACCGCGCGCCAGCG > minE/1015541‑1015680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |