| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,179,532 | T→C | 51.9% | *328Q (TAA→CAA) | ansA → | cytoplasmic L‑asparaginase I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,179,532 | 0 | T | C | 51.9% | 2.5 / 68.5 | 54 | *328Q (TAA→CAA) | ansA | cytoplasmic L‑asparaginase I |
| Reads supporting (aligned to +/- strand): ref base T (13/13); new base C (8/20); total (21/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
CGCTAACCAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACT > minE/1179464‑1179598 | cGCTAACCAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCaa < 1:2653063/71‑1 (MQ=255) gCTAACCAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGCGCCaaa < 1:12243/71‑1 (MQ=255) gCTAACCAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCaaa < 1:4842924/71‑1 (MQ=255) cTAACCAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCaaaa < 1:106570/71‑1 (MQ=255) atcAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAAc < 1:2486513/67‑1 (MQ=255) aCCAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCt < 1:3792839/71‑1 (MQ=255) ccAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTg > 1:898835/1‑71 (MQ=255) ccAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTg > 1:2892605/1‑71 (MQ=255) cAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCTAAAACCttc < 1:4496678/71‑3 (MQ=255) cAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTgc > 1:3271803/1‑71 (MQ=255) cAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTgc > 1:858623/1‑71 (MQ=255) aaCTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTgcgc < 1:44065/71‑1 (MQ=255) aCTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTGcgcg > 1:1460595/1‑71 (MQ=255) gCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCgcggc > 1:5178588/1‑70 (MQ=255) cATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTGCgcggcg < 1:2140221/70‑1 (MQ=255) cATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTGCgcggcg < 1:4744465/70‑1 (MQ=255) aTTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCaaa < 1:165190/57‑1 (MQ=255) aTTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCaaa < 1:3727288/57‑1 (MQ=255) aTTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCaaa < 1:3893390/57‑1 (MQ=255) aTTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCaaa < 1:3971997/57‑1 (MQ=255) tACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACt > 1:4923195/1‑71 (MQ=255) aCCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTGCGCGGCGAACt > 1:746055/1‑70 (MQ=255) aCCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTGCGCGGCGAACt < 1:2948543/70‑1 (MQ=255) ccTGCTTAGCCAGTAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTgc < 1:79608/59‑1 (MQ=255) ccTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTgc < 1:4251452/59‑1 (MQ=255) ccTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTGCTCGGCGAACTg < 1:1472010/70‑1 (MQ=255) ttAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAACCTGCGCGGCGAACTGACGccg > 1:3939705/1‑69 (MQ=255) gCCAGGAACTGTATACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGc < 1:4285207/71‑1 (MQ=255) ccAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCCaaa < 1:2729597/44‑1 (MQ=255) aCTGGATACTGAAACCATTCGCAAGGCCATGAGCCAAAAcc > 1:2774454/1‑41 (MQ=255) cTGGATACTGAAACCATTCGCAAGGCCATGAGCCaaa < 1:3934465/37‑1 (MQ=255) tGGATACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCt < 1:3785432/63‑1 (MQ=255) ggATACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCa > 1:919498/1‑71 (MQ=255) ggATACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCa > 1:5183983/1‑71 (MQ=255) gATACTGAAACCATTCGCAAGGCCATGAGCTAAAAc > 1:1504160/1‑36 (MQ=255) aTACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGAc < 1:1191379/52‑1 (MQ=255) aTACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGAc < 1:548966/52‑1 (MQ=255) cTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACttt < 1:3540266/70‑1 (MQ=255) gAAACCATTTGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCt < 1:3121499/55‑1 (MQ=255) gAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTaa > 1:901442/1‑70 (MQ=255) gAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAAt > 1:2287663/1‑71 (MQ=255) gAAACCATTCGCAAGGCCATGAGCCAAAACCTGCGCGGCGAACTGACGc < 1:2351412/49‑1 (MQ=255) aaaCCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATc > 1:4550020/1‑71 (MQ=255) cATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGc > 1:224134/1‑71 (MQ=255) cATTCGCAAGGCCATGAGCTAAAACCTGCGAGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGc > 1:2001226/1‑71 (MQ=255) aTTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTa < 1:2576795/63‑1 (MQ=255) aTTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGCt < 1:3881346/71‑1 (MQ=255) ggCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCATATCTCACTTTAATCGTGCTCACATTAc > 1:2865008/1‑71 (MQ=255) ggCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGCTCACATTa > 1:1571229/1‑70 (MQ=255) ccATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGCTCACATTACGt < 1:216491/71‑1 (MQ=255) aTGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGCTca < 1:1624897/61‑1 (MQ=255) aTGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGCTca < 1:365010/61‑1 (MQ=255) tGAGCTAAAACCTGCGCGGAGAACTGACGCTTTGCTca > 1:5331619/1‑38 (MQ=255) aGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACt < 1:4188420/70‑1 (MQ=255) | CGCTAACCAAACTGCATTACCTGCTTAGCCAGGAACTGGATACTGAAACCATTCGCAAGGCCATGAGCTAAAACCTGCGCGGCGAACTGACGCTTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACT > minE/1179464‑1179598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |