| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,250,792 | A→C | 80.4% | L167L (CTT→CTG) | ruvC ← | component of RuvABC resolvasome, endonuclease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,250,792 | 0 | A | C | 80.4% | 217.1 / 27.8 | 86 | L167L (CTT→CTG) | ruvC | component of RuvABC resolvasome, endonuclease |
| Reads supporting (aligned to +/- strand): ref base A (11/6); new base C (38/31); total (49/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGGAGTGGAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTGATAGCAATCG > minE/1250727‑1250859 | gggagTGGAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGtt > 1:1656491/1‑71 (MQ=255) ggagTGGAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAg > 1:4034332/1‑67 (MQ=255) tGGAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCa < 1:926739/61‑1 (MQ=255) ggAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCcg > 1:2847345/1‑71 (MQ=255) gAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTc < 1:2310956/65‑1 (MQ=255) gAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTc < 1:3858193/65‑1 (MQ=255) gAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTc < 1:3292639/65‑1 (MQ=255) gAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTc < 1:5232315/65‑1 (MQ=255) gAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCcgc > 1:776429/1‑71 (MQ=255) aaaCGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCcgc < 1:3940179/70‑1 (MQ=255) aCGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCa < 1:5542831/56‑1 (MQ=255) gCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTc > 1:2783068/1‑71 (MQ=255) ccTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCg > 1:3366392/1‑71 (MQ=255) cTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGc < 1:2606734/71‑1 (MQ=255) cTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGc > 1:1763296/1‑71 (MQ=255) cTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGc > 1:1584978/1‑71 (MQ=255) tCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCa < 1:2921614/51‑1 (MQ=255) aGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCa > 1:5379213/1‑71 (MQ=255) aGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCa > 1:1588906/1‑71 (MQ=255) aGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCAAGGTTCa > 1:1139307/1‑56 (MQ=255) gCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGcc > 1:593392/1‑58 (MQ=255) gCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCTCTCAt > 1:2521923/1‑71 (MQ=255) ccGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCAt < 1:2621678/70‑1 (MQ=255) gAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAgg > 1:3654471/1‑47 (MQ=255) aCCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCTGCCGCGATTCGCTCATCTGCATCGCa < 1:3995490/71‑1 (MQ=255) aCCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCg < 1:734720/69‑1 (MQ=255) aCCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCa < 1:3620735/71‑1 (MQ=255) aCCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCa < 1:5096119/71‑1 (MQ=255) aCCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCa > 1:3978096/1‑71 (MQ=255) aCCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCa < 1:3062776/71‑1 (MQ=255) aCCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCa < 1:1837034/71‑1 (MQ=255) aCCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCa > 1:4057136/1‑71 (MQ=255) ccGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGAtt > 1:5537674/1‑53 (MQ=255) cGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCAtt > 1:3844930/1‑71 (MQ=255) aGGCGGTATAACTTAACGCAGTCGCCCTCTCGCCAGGt > 1:3054566/1‑38 (MQ=255) ggTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGAc > 1:3307743/1‑70 (MQ=255) ggTATAACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGAc > 1:2327451/1‑70 (MQ=255) tataACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCcgcg < 1:4703544/41‑1 (MQ=255) tataACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCcgcg < 1:2878748/41‑1 (MQ=255) ataACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCAt > 1:3117652/1‑50 (MQ=255) ataACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCAt > 1:2490159/1‑50 (MQ=255) ataACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCAt > 1:2192877/1‑50 (MQ=255) ataACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGa > 1:5252333/1‑66 (MQ=255) ataACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGa > 1:1742769/1‑66 (MQ=255) ataACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAAc > 1:4943233/1‑71 (MQ=255) taACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGcc < 1:4883637/36‑1 (MQ=255) taACTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACg > 1:2442969/1‑71 (MQ=255) aaCTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGt > 1:2458016/1‑71 (MQ=255) aaCTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGt > 1:905482/1‑71 (MQ=255) aaCTTAACACAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGt > 1:3890810/1‑71 (MQ=255) aCTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGa > 1:477952/1‑38 (MQ=255) aCTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGAt > 1:5252027/1‑39 (MQ=255) aCTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCa > 1:2012451/1‑46 (MQ=255) cTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTgg < 1:2120054/71‑1 (MQ=255) cTTAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTgg < 1:3208189/71‑1 (MQ=255) cTTAACGCAGTCGCCCTCTCGCCAGGTGCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTgg < 1:1684484/71‑1 (MQ=255) cTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTgg < 1:4063503/71‑1 (MQ=255) cTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTgg < 1:3337786/71‑1 (MQ=255) cTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTgg < 1:4846725/71‑1 (MQ=255) ttAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATc > 1:2089826/1‑46 (MQ=255) ttAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATc > 1:760888/1‑46 (MQ=255) ttAACGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATc > 1:5164677/1‑46 (MQ=255) aaCGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGc < 1:2961143/69‑1 (MQ=255) cGCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGa > 1:4125567/1‑57 (MQ=255) gCAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTgg > 1:1321803/1‑71 (MQ=255) cAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACg < 1:854131/61‑1 (MQ=255) cAGTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACg < 1:2937428/61‑1 (MQ=255) cAGTCGCCCTCTCGCCAGGTCCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACg < 1:4306517/61‑1 (MQ=255) gTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCt < 1:1768167/51‑1 (MQ=255) gTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTg > 1:1920164/1‑61 (MQ=255) gTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTg > 1:2940575/1‑61 (MQ=255) gTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTg > 1:3316480/1‑61 (MQ=255) gTCGCCCTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGt < 1:493833/66‑1 (MQ=255) ccTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGa > 1:4146381/1‑48 (MQ=255) ccTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGa > 1:2300581/1‑48 (MQ=255) ccTCTCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGa > 1:5046921/1‑48 (MQ=255) ccTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTACCGTGGCAGTGGGTGATAg > 1:857045/1‑70 (MQ=255) ccTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTGATAg < 1:2038286/70‑1 (MQ=255) ctctCGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTGATAGCa < 1:83791/71‑1 (MQ=255) tctcGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTc < 1:3947265/43‑1 (MQ=255) tctcGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTc < 1:4308801/43‑1 (MQ=255) tctcGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCt < 1:879897/44‑1 (MQ=255) tctcGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTgg > 1:2410675/1‑55 (MQ=255) tctcGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTg < 1:3427451/64‑1 (MQ=255) tctcGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTg < 1:3884033/64‑1 (MQ=255) tctcGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTg < 1:2008479/64‑1 (MQ=255) tctcGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTGATAGCaa > 1:676366/1‑71 (MQ=255) cGCCAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTGATAGCAATCg > 1:3392074/1‑71 (MQ=255) gCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTGATAGCAATCg < 1:1763235/70‑1 (MQ=255) aaGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGt < 1:3947955/47‑1 (MQ=255) | GGGAGTGGAAACGCCTCAGCCGGAACTGACCGAGGCGGTATAACTTAACGCAGTCGCCCTCTCGCAAGGTTCAGCCGCGATTCGCTCATCTGCATCGCATTCTGACTAACGTGGCAGTGGGTGATAGCAATCG > minE/1250727‑1250859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |