| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,259,805 | C→T | 23.7% | A373A (GCG→GCA) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,259,805 | 0 | C | T | 23.7% | 135.0 / 39.7 | 76 | A373A (GCG→GCA) | torZ | trimethylamine N‑oxide reductase system III, catalytic subunit |
| Reads supporting (aligned to +/- strand): ref base C (30/28); new base T (13/5); total (43/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 | |||||||||||
TTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTCCCCAGCCTGC > minE/1259737‑1259873 | ttaccaccaTTGGCAAAATGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATtgc > 1:2755281/4‑71 (MQ=255)ttGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATcgc > 1:4433378/1‑71 (MQ=255) taccaccaTTGGCAAAATGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATtgc > 1:239651/3‑70 (MQ=255) gAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCAc < 1:2844667/71‑1 (MQ=255) gAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCAc < 1:3032831/71‑1 (MQ=255) aGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCAc > 1:4600250/1‑70 (MQ=255) aaaTGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGc < 1:3618007/62‑1 (MQ=255) aaaTGGTAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGCGTGAcga < 1:419678/69‑3 (MQ=255) gtAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGCGTGACGATCATcc < 1:138006/70‑1 (MQ=255) gtAAGAAAGACCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGCGTGACGATCATcc < 1:4525914/70‑1 (MQ=255) tAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATc > 1:3898621/1‑69 (MQ=255) gagaAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGc < 1:1149535/63‑1 (MQ=255) gagaAACCAAAACCGCCGCACGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGc < 1:248870/63‑1 (MQ=255) gaAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGtt > 1:2201941/1‑71 (MQ=255) agaCCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGCGTGACGATCATCCa > 1:402649/3‑65 (MQ=255) gaCCAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGCGTGACGATCATCCAGTGtttt > 1:4128930/2‑70 (MQ=255) aaCCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGc < 1:3615561/50‑1 (MQ=255) aaCCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCa < 1:908069/60‑1 (MQ=255) aaCCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTc < 1:2122035/71‑1 (MQ=255) aCCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTc > 1:2733240/1‑70 (MQ=255) ccAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCa > 1:2902326/1‑55 (MQ=255) cAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATtgct > 1:3988192/1‑40 (MQ=12) cAAAACCGCCGCCGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGCGTGACGATCATCCAGTGtttt > 1:3137196/1‑67 (MQ=255) cAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATcc < 1:1660741/60‑1 (MQ=255) cAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAgt < 1:3178490/63‑1 (MQ=255) aaCCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCa > 1:5384322/1‑71 (MQ=255) aaCCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCa > 1:2015270/1‑71 (MQ=255) cgccgcCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGt < 1:317868/65‑1 (MQ=255) gccgccGGGTGTGCCGATTTGCCCCAACATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCACCa > 1:2928180/1‑70 (MQ=255) gccgccCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCa > 1:3376499/1‑70 (MQ=255) cgccCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTg < 1:5535675/61‑1 (MQ=255) gccCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGttt < 1:2246028/57‑1 (MQ=255) gccCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATAtt < 1:4789950/71‑1 (MQ=255) ccgggTGTGCCGATTTGCCCCAACATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCa > 1:3004314/4‑63 (MQ=255) cccGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTg > 1:2805669/1‑71 (MQ=255) cGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGGATCCAGTGTTTCTGTTCACCATATTGCt < 1:3908737/71‑1 (MQ=255) cGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAg > 1:1119392/1‑49 (MQ=255) tgtACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGgc > 1:2667483/1‑71 (MQ=255) tACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTg < 1:1224449/52‑1 (MQ=255) tACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTg < 1:3432571/52‑1 (MQ=255) ccAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAgtgt > 1:1547495/1‑45 (MQ=255) ccAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAgtgt > 1:2318236/1‑45 (MQ=255) ccAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAgtgt > 1:2839865/1‑45 (MQ=255) tttGCCCCAACATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCACCAAACTGTTGGCGCTGCAt > 1:4054543/3‑70 (MQ=255) tttGCCCCAACATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCACCAAACTGTTGGCGCTGCAt > 1:1989388/3‑70 (MQ=255) tCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCt < 1:148507/60‑1 (MQ=255) cTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTc > 1:4127653/1‑71 (MQ=255) cTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTc > 1:761480/1‑71 (MQ=255) cTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTc > 1:3686733/1‑71 (MQ=255) tGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGtt > 1:4328969/1‑46 (MQ=255) tGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGtt > 1:402258/1‑46 (MQ=255) tGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGtt > 1:3432523/1‑46 (MQ=255) tGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTcc > 1:5063077/1‑71 (MQ=255) cccTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTcccc < 1:4124712/71‑1 (MQ=255) cccTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTcccc < 1:2038243/71‑1 (MQ=255) cccaaCATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCACCAAACTGTTGGCGCTGCATTccc > 1:5694394/4‑69 (MQ=255) cccaaCATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCACCAAACTGTTGGCGCTGCATTccc > 1:1510680/4‑69 (MQ=255) cccaaCATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCACCAAACTGTTGGCGCTGCATTccc > 1:175182/4‑69 (MQ=255) cccaaCATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCAACAAACTGTTGGCGCTGCATTCCCCa < 1:5584119/68‑1 (MQ=255) ccTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTcccc < 1:3988489/70‑1 (MQ=255) tAACATCGCCGCCAGCGTCACCAGCATCCAGTGtt < 1:5567807/35‑1 (MQ=255) tAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCAc < 1:1748286/44‑1 (MQ=255) tAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCatat < 1:3359860/49‑1 (MQ=255) tAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCt < 1:1665276/59‑1 (MQ=255) tAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTccc > 1:3949943/1‑67 (MQ=255) tAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTCCCCAGc > 1:3334757/1‑71 (MQ=255) aaCATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTCCCCAGcc > 1:1835596/1‑71 (MQ=255) aCATTGCTGCCAGCGTGACGATCATCCAGTGtttt > 1:1916089/1‑34 (MQ=12) aCATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCACCAAACTGTTgg > 1:205362/1‑53 (MQ=255) aCATTGCTGCCAGCGTGACGATCATCCAGTGTTTTTGCTCACCAAACTGTTgg > 1:4864383/1‑53 (MQ=255) aCATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCata > 1:5096688/1‑46 (MQ=255) aCATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCata > 1:3982914/1‑46 (MQ=255) aCATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCata > 1:827036/1‑46 (MQ=255) aCATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCa < 1:2800889/44‑1 (MQ=255) aCATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCa < 1:1991530/44‑1 (MQ=255) aCATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTg > 1:3103883/1‑49 (MQ=255) aCATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTg > 1:1661717/1‑49 (MQ=255) cATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTCCCCAGCCTg > 1:2768747/1‑71 (MQ=255) aTCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCa < 1:3491325/42‑1 (MQ=255) aTCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTCCCCAGCCTGc < 1:5090975/71‑1 (MQ=255) cgccgcCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCata > 1:4720874/1‑42 (MQ=255) cgccgcCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCata > 1:1491933/1‑42 (MQ=255) cgccgcCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCata > 1:2764681/1‑42 (MQ=255) cgccgcCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCata > 1:1536825/1‑42 (MQ=255) cgccgcCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCata > 1:3638466/1‑42 (MQ=255) | TTGCCACCGTTGGAGTAATGATAAGAGAAACCAAAACCGCCGCCCGGTGTACCAATCTGCCCTAACATCGCCGCCAGCGTCACCAGCATCCAGTGTTTCTGTTCACCATATTGCTGGCGCTGAATTCCCCAGCCTGC > minE/1259737‑1259873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |