| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,398,576 | T→A | 6.0% | S300S (TCT→TCA) | yeiQ → | predicted dehydrogenase, NAD‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,398,576 | 0 | T | A | 6.0% | 270.5 / 8.0 | 101 | S300S (TCT→TCA) | yeiQ | predicted dehydrogenase, NAD‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (31/63); new base A (2/4); total (33/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
Only 100 of 116 total aligned reads displayed.
GTGTACAAATGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATTGCATGCAGGATCGCGCATT > minE/1398506‑1398644 | gtgtACAAATGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCActct > 1:4196684/1‑71 (MQ=255) tgtACAAATGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCtt > 1:424754/1‑71 (MQ=255) tACAAATGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCtttt > 1:1782652/1‑71 (MQ=255) cAAATGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTTCGGATGCTTAATGGCAGCCACTCTTTtc < 1:3745041/70‑1 (MQ=255) cAAATGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTtct > 1:686893/1‑71 (MQ=255) cAAATGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTtc < 1:3461865/70‑1 (MQ=255) aaaTGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTtctc < 1:4067791/71‑1 (MQ=255) aaTGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCtttt > 1:1077212/1‑67 (MQ=255) aaTGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCg > 1:5573882/1‑71 (MQ=255) aaTGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCg > 1:1694403/1‑71 (MQ=255) aTGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGc < 1:4365672/71‑1 (MQ=255) gTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCtt < 1:4777362/70‑1 (MQ=255) gTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTa < 1:5051443/71‑1 (MQ=255) gTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTa > 1:4255604/1‑71 (MQ=255) gTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTa > 1:3027454/1‑71 (MQ=255) gTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTa < 1:5078414/71‑1 (MQ=255) agcgatgTGCTGCCTTATGAAGAGATGAAGTTGCGCATGCTCAACGGCAGTCATTCATTCCTGGCGTATc < 1:2354516/67‑1 (MQ=255) gcgatgTGCTGCCTTATGAAGAGATGAAGTTGCGCATGCTCAACGGCAGTCATTCATTCCTGGCGTATCt < 1:3224720/68‑1 (MQ=255) cgatgTGCTGCCTTATGAAGAGATGAAGTTGCGCATGCTCAACGGCAGTCATTCATTCCTGGCGTATc < 1:1424359/67‑1 (MQ=255) gatgTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTgg < 1:5159011/70‑1 (MQ=255) tgTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGtt < 1:4385565/71‑1 (MQ=255) tCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCttt < 1:3581651/52‑1 (MQ=255) tCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCtt < 1:4665547/60‑1 (MQ=255) ccTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTAcc > 1:5546970/1‑71 (MQ=255) cTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCg < 1:547731/55‑1 (MQ=255) tGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTa < 1:5057520/58‑1 (MQ=255) ccATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACctct < 1:3320876/70‑1 (MQ=255) ccATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACctc < 1:5654675/69‑1 (MQ=255) ccATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCCTTTCTCGCTTATCTGGGTTACctc < 1:243541/69‑1 (MQ=255) cATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTAcc > 1:3515975/1‑66 (MQ=255) tGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTtct < 1:3519612/47‑1 (MQ=255) tGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTtct < 1:1962262/47‑1 (MQ=255) gggAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTg < 1:2749945/56‑1 (MQ=255) atgAAGAGATGAAGTTGCGCATGCTCAACGGCAGTCATTCATTCCTGGCGTATCTGGGGTATCTTGCAGGa > 1:1029373/3‑71 (MQ=255) atgAAGAGATGAAGTTGCGCATGCTCAACGGCAGTCATTCATTCCTGGCGTATCTGGGGTATCTTGCAGGa > 1:5199356/3‑71 (MQ=255) tgAAGAGATGAAGTTGCGCATGCTCAACGGCAGTCATTCATTCCTGGCGTATCTGGGGTATCTTGCAGGAt < 1:1907401/70‑1 (MQ=255) ggAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGAt < 1:1049247/71‑1 (MQ=255) gAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGAtt > 1:489934/1‑71 (MQ=255) gagaTGAAACTGCGGATGCTTAATGGCAGCCACTCtttt < 1:288878/39‑1 (MQ=255) gagaTGAAACTGCGGATGCTTAATGGCAGCCACTCtttt < 1:3620028/39‑1 (MQ=255) gagaTGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCtctc > 1:879195/1‑62 (MQ=255) atgaTGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTtct < 1:4677885/39‑1 (MQ=19) tgaTGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTac > 1:2217285/2‑46 (MQ=16) agaTGAAACTGCGGATGCTTAATGGCAGCCACTCtttt < 1:1715180/38‑1 (MQ=255) agaTGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGcc < 1:2707655/71‑1 (MQ=255) agaTGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGcc < 1:5531092/71‑1 (MQ=255) gaTGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTtct < 1:2516500/39‑1 (MQ=21) aTGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTtctg > 1:1802712/1‑38 (MQ=18) aTGAAACTGCGTATGCTTAATGGCAGCCACTCTTTtc < 1:2964225/37‑1 (MQ=255) aTGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACctct < 1:3071036/58‑1 (MQ=255) aTGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACctc < 1:2436884/57‑1 (MQ=255) aTGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACctc < 1:1556137/57‑1 (MQ=255) aTGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCa > 1:4584046/1‑71 (MQ=255) tGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCat < 1:3566817/71‑1 (MQ=255) tGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCat < 1:3302335/71‑1 (MQ=255) gAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTggg > 1:3509646/1‑48 (MQ=255) gAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTggg > 1:2800551/1‑48 (MQ=255) gAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTgg > 1:5109129/1‑47 (MQ=255) gAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCat < 1:2486661/70‑1 (MQ=255) aaaCTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCt > 1:103924/1‑39 (MQ=255) aaaCTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTAt > 1:4186710/1‑42 (MQ=255) aaaCTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCatat > 1:4494058/1‑71 (MQ=255) aaaCTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCatat > 1:4617564/1‑71 (MQ=255) aCTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGAt < 1:729386/59‑1 (MQ=255) aCTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTc < 1:2563694/61‑1 (MQ=255) aCTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCatat > 1:278798/1‑69 (MQ=255) ctgctgATGCTTAATGGCAGCCACTCTTTTCTCGCtt < 1:923099/37‑1 (MQ=255) cTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCtc < 1:5095352/42‑2 (MQ=12) cTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTAc < 1:669445/48‑1 (MQ=255) cGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTa < 1:838642/35‑1 (MQ=255) cGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTAt > 1:3124372/1‑36 (MQ=255) cGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGt < 1:4640400/69‑1 (MQ=255) ggATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTg < 1:751561/38‑1 (MQ=255) ggATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTg < 1:5406986/38‑1 (MQ=255) ggATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTg < 1:4890018/38‑1 (MQ=255) ggATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGa < 1:4052202/70‑1 (MQ=255) taTGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTAcc < 1:3865900/43‑1 (MQ=16) taTGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTAcc < 1:2209461/43‑1 (MQ=16) taTGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTAcc < 1:43793/43‑1 (MQ=16) taTGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTAcc < 1:319173/43‑1 (MQ=16) gATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGAtt < 1:839277/71‑1 (MQ=255) tGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACctc > 1:3064531/1‑44 (MQ=16) tGCTGAACGGCAGACACTCTTTTCTGGCGTACCTCGGTTACctc > 1:2113970/1‑44 (MQ=255) ttAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTAGCCCATATCAGTGATtgcatg > 1:1332273/1‑71 (MQ=255) tAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCa > 1:884494/1‑54 (MQ=255) aaTGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATtgcatg < 1:1182832/69‑1 (MQ=255) aTGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATTGCATGCAg > 1:5126400/1‑71 (MQ=255) tGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATtgcatgc < 1:1939867/68‑1 (MQ=255) tGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATtgcatgc < 1:3728052/68‑1 (MQ=255) ccACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATTGCATGCAGGATcgcg < 1:2551372/71‑1 (MQ=255) cACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATtgcatgca > 1:3783872/1‑62 (MQ=255) cACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATtgcatgca > 1:1060234/1‑62 (MQ=255) cACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATtgcatgc > 1:208736/1‑61 (MQ=255) cACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATTGCATGCAGGATCgcgc < 1:1276337/71‑1 (MQ=255) cACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATTGCATGCAGGATCgcgc < 1:2882270/71‑1 (MQ=255) ctctTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATTGCATGCAGGATCGCGCAt > 1:1836041/1‑71 (MQ=255) tctTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATTGCATGCAgg < 1:1137083/61‑1 (MQ=255) ctTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATtgcatgc > 1:2268802/1‑57 (MQ=255) ttttCTCGCTTATCTGGGTTACCTCTCAGGATTCg > 1:704466/1‑35 (MQ=255) ttttCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCa > 1:867980/1‑39 (MQ=255) | GTGTACAAATGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGGATGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCCATATCAGTGATTGCATGCAGGATCGCGCATT > minE/1398506‑1398644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |