| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,564,887 | C→T | 63.9% | intergenic (‑99/+193) | yfdE ← / ← glk | predicted CoA‑transferase, NAD(P)‑binding/glucokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,564,887 | 0 | C | T | 63.9% | 50.2 / 55.5 | 61 | intergenic (‑99/+193) | yfdE/glk | predicted CoA‑transferase, NAD(P)‑binding/glucokinase |
| Reads supporting (aligned to +/- strand): ref base C (14/8); new base T (14/25); total (28/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.03e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
GGCATTTATGTAAAATCAATAACATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCGCCGTTACCAGACAAATAATGCATTTACTG > minE/1564831‑1564950 | ggCATTTATGTAAAATCAATAACATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTa > 1:831183/1‑71 (MQ=255)ggCATTTATGTAAAATCAATAACATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTa > 1:370087/1‑71 (MQ=255) cATTTATGTAAAATCAATAACATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAAt < 1:1946752/67‑1 (MQ=255) tATGTAAAATCAATAACATGATTAACGTTAATTCATCGTTCAGTGATAGTCGACGAGTGAAATTATGa > 1:3969693/1‑68 (MQ=255) aTGTAAAATCAATAACATGATTAACGTTAATTCCTCGTTCAGTGATAGCCGACGAGTGAAATTATGAACg < 1:5423354/70‑1 (MQ=255) tGTAAAATCAATAACATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACg < 1:5243747/69‑1 (MQ=255) tGTAAAATCAATAACATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACg < 1:3051495/69‑1 (MQ=255) aTAACATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACa < 1:1394095/68‑1 (MQ=255) aaCATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACaaa > 1:1090873/1‑68 (MQ=255) aCATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAAt > 1:3716286/1‑48 (MQ=255) cATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCGcc > 1:3983791/1‑71 (MQ=255) tGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCg > 1:1351107/1‑67 (MQ=255) tAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTAt > 1:5340105/1‑44 (MQ=255) tAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTAt > 1:4620577/1‑44 (MQ=255) tAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTAt > 1:3882854/1‑44 (MQ=255) atcGTTAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTAc > 1:13374/3‑69 (MQ=255) atcGTTAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTAc > 1:5665730/3‑69 (MQ=255) cGTTAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGaa > 1:3674909/1‑44 (MQ=255) gTTAAATCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAAt > 1:989525/1‑57 (MQ=255) ttAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTa < 1:89866/38‑1 (MQ=255) ttAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTa < 1:2742161/38‑1 (MQ=255) ttAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTa < 1:2246871/38‑1 (MQ=255) ttAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTa < 1:75740/38‑1 (MQ=255) ttAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTa < 1:1281568/38‑1 (MQ=255) ttAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGc < 1:1555840/47‑1 (MQ=255) ttAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGc < 1:1549224/47‑1 (MQ=255) ttAATTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTa < 1:4799263/64‑1 (MQ=255) ttAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAAc < 1:3607175/43‑1 (MQ=255) ttAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCGc > 1:2518740/1‑59 (MQ=255) aaTTCCTCGTTCAGTGATAGTTGACGAGTGAAAtt > 1:5277583/1‑35 (MQ=255) aaTTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACaaa > 1:745230/1‑71 (MQ=255) aaTTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCGCCGTTACCAGACaaa > 1:1866222/1‑71 (MQ=255) aTTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAaat < 1:620533/71‑1 (MQ=255) aTTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAaat < 1:3780505/71‑1 (MQ=255) aTTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAaat < 1:4329885/71‑1 (MQ=255) aTTCCTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAaat < 1:3513230/71‑1 (MQ=255) ccTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTa > 1:3833993/1‑58 (MQ=255) ccTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACaa < 1:5404833/66‑1 (MQ=255) ccTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAaataat > 1:3860437/1‑71 (MQ=255) ccTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAaataat > 1:1453044/1‑71 (MQ=255) ccTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAaataa > 1:3845153/1‑70 (MQ=255) ccTCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAaataa < 1:4794704/70‑1 (MQ=255) ccTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCGCCGTTACCAGACAaataat > 1:5530491/1‑71 (MQ=255) tCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCaa < 1:1514477/41‑2 (MQ=255) tCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCa < 1:1181267/59‑1 (MQ=255) tCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCa < 1:453067/59‑1 (MQ=255) tCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCa < 1:1866768/59‑1 (MQ=255) tCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCa < 1:3649770/59‑1 (MQ=255) tCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCa < 1:3466279/59‑1 (MQ=255) tCGTTCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAAATAATg > 1:1232916/1‑70 (MQ=255) ttCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAAATAATGCAtt < 1:5621617/71‑1 (MQ=255) ttCAGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAAATAATGCAtt < 1:2494953/71‑1 (MQ=255) ttCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCGCCGTTACCAGACAAATAATGCAtt < 1:433230/71‑1 (MQ=255) aGTGATAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAAATAATGCATTTa < 1:2541359/70‑1 (MQ=255) gTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCGCCGTTACCAGACAAATAATGCATTTACt < 1:4275528/71‑1 (MQ=255) tGATAGTTGACGAGTGAAATTATGAACGTGCAAAACaaa < 1:2050402/39‑1 (MQ=38) tGATAGTTGACGAGTGAAATTATGAACGTGCAAAACaaa < 1:2188321/39‑1 (MQ=38) gATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCGCCGTTACCAGACAAATAATGCATTTACTg > 1:4525058/1‑70 (MQ=255) aTAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGt > 1:4576650/1‑44 (MQ=38) aTAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAaataa > 1:1927597/1‑58 (MQ=255) aTAGTTGACGAGTGAAATTATGAACGTGCAAAACAAATCGCCGTTACCAGACAAATAATGCATTTACTg > 1:1972136/1‑69 (MQ=255) | GGCATTTATGTAAAATCAATAACATGATTAACGTTAATTCCTCGTTCAGTGATAGTCGACGAGTGAAATTATGAACGTGCAGAACAAATCGCCGTTACCAGACAAATAATGCATTTACTG > minE/1564831‑1564950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |