| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,792,319 | A→G | 11.5% | M235V (ATG→GTG) | gabT → | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,792,319 | 0 | A | G | 11.5% | 202.6 / 14.0 | 78 | M235V (ATG→GTG) | gabT | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (32/37); new base G (5/4); total (37/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGCGGTTTCTACGCCTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTGTTTGCGATGGAGCAGATG > minE/1792249‑1792387 | aGGCGGTTTCTACGCCTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCa < 1:3694155/71‑1 (MQ=255) ggTTTCTACGCCTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCt < 1:4571069/71‑1 (MQ=255) ttCTACGCCTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAt > 1:4443432/1‑71 (MQ=255) tCTACGCCTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTTACGAGCACGGGATCATGCTGAtt > 1:2877950/1‑71 (MQ=255) cGCCTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGcc > 1:4371433/1‑70 (MQ=255) cGCCTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGc < 1:1034862/69‑1 (MQ=255) cTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACTAGCACGGGATCATGCTGATTGc < 1:5473312/66‑1 (MQ=255) cTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATg < 1:5214815/71‑1 (MQ=255) cTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATg < 1:3023233/71‑1 (MQ=255) tcgtcgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCa < 1:405858/55‑1 (MQ=255) tcgtcgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCa < 1:5311388/55‑1 (MQ=255) tcgtcgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAtt < 1:876693/63‑1 (MQ=255) tcgtcgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAtt < 1:1491870/63‑1 (MQ=255) tcgtcgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAtt < 1:4722991/63‑1 (MQ=255) tcgtcgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAtt < 1:349032/63‑1 (MQ=255) gtcgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATg < 1:2151589/68‑1 (MQ=255) gtcgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGaa < 1:4960442/70‑1 (MQ=255) gtcgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGa < 1:2090819/69‑1 (MQ=255) cgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAt > 1:1352033/1‑58 (MQ=255) cgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAt > 1:1566072/1‑58 (MQ=255) cgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAt > 1:2296925/1‑58 (MQ=255) cgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAt > 1:4995256/1‑58 (MQ=255) cgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAt > 1:3393540/1‑58 (MQ=255) cgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAt > 1:3119042/1‑58 (MQ=255) cgCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTg > 1:1732872/1‑71 (MQ=255) gCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGcc < 1:1719065/61‑1 (MQ=255) gCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGcc < 1:3290203/61‑1 (MQ=255) gCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGcc < 1:2223772/61‑1 (MQ=255) gCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTg > 1:5565677/1‑70 (MQ=255) gCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTg < 1:5211219/70‑1 (MQ=255) gCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTg > 1:1320184/1‑70 (MQ=255) gCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGc < 1:568096/71‑1 (MQ=255) cAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGc < 1:2647816/58‑1 (MQ=255) cAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGc < 1:278195/58‑1 (MQ=255) aGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCa > 1:4922956/1‑69 (MQ=255) gCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCa > 1:5103033/1‑68 (MQ=255) cTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATg < 1:4135747/59‑1 (MQ=255) tATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAgcgg < 1:1002385/69‑1 (MQ=255) aTGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAgcggcg < 1:3271303/70‑1 (MQ=255) tGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGa > 1:4482616/1‑45 (MQ=255) tGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAg < 1:2577810/57‑1 (MQ=255) aGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCgggg > 1:3037624/1‑71 (MQ=255) gCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAgc > 1:1679210/1‑61 (MQ=255) cGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCaga > 1:5051213/1‑58 (MQ=255) cGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCaga > 1:2879982/1‑58 (MQ=255) cGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCaga > 1:4511673/1‑58 (MQ=255) tttACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGcc < 1:4685251/43‑1 (MQ=255) tttACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGcc < 1:4032040/43‑1 (MQ=255) tttACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGcc < 1:1842095/43‑1 (MQ=255) tACGCGCTCTGTGTGACGAGCACGGGATCATGCTGAtt > 1:4306828/1‑38 (MQ=255) tACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGa > 1:759671/1‑43 (MQ=255) tctGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGc > 1:1664302/1‑71 (MQ=255) ctGTGTGACGAGCACGGGATCATGCTGATTGCCGATg < 1:5180370/37‑1 (MQ=255) ctGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTAc > 1:4993916/1‑62 (MQ=255) ctGTGCGACGAGCACGGTATTGTGATGATTGCTGATGAAGTGCaaag > 1:725134/1‑47 (MQ=12) ctGTGCGACGAGCACGGTATTGTGATGATTGCTGATGAAGTGCAAAGCGGCTTTGCGCGTACCGGTAAGCt < 1:4652432/71‑1 (MQ=255) tgtgtgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTg > 1:4684396/1‑71 (MQ=255) gtgcgACGAGCACGGTATTGTGATGATTGCTGATGAAGTGCAAAgcggct < 1:2046466/50‑2 (MQ=12) tgtgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTg < 1:1308500/69‑1 (MQ=255) tgtgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTg < 1:849431/69‑1 (MQ=255) tgtgACGAGCACGGGATCATGCTGAATGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCt < 1:4720948/68‑1 (MQ=255) gtgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCagag < 1:4913888/43‑1 (MQ=255) gtgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCagag < 1:3701008/43‑1 (MQ=255) gtgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCagag < 1:4194455/43‑1 (MQ=255) gcgACGAGCACGGTATTGTGATGATTGCTGATGAAGTGCAAAgcggc > 1:4235612/3‑47 (MQ=12) gcgACGAGCACGGTATTGTGATGATTGCTGATGAAGTGCAAAGCGGCTTTGCGCGTACCGGTAAGCTGttt > 1:4831320/3‑71 (MQ=255) tgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCggg > 1:1961799/1‑51 (MQ=255) tgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCggg > 1:532730/1‑51 (MQ=255) tgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCggg > 1:4733063/1‑51 (MQ=255) tgACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCggg > 1:2040951/1‑51 (MQ=255) gatgAGCACGGTATTGTGATGATTGCTGATGAAGTGCAAAGCGGCTTTGCGCGTACCGGTAAGCTGTTTGc < 1:893522/68‑1 (MQ=255) aCGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTGTTTGc < 1:2704639/70‑1 (MQ=255) aCGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTGTTTGc < 1:782166/70‑1 (MQ=255) gAGCACGGTATTGTGATGATTGCTGATGAAGTGCAAAGCGGCTTTGCGCGTACCGGTAAGCTGtt > 1:5575742/1‑65 (MQ=255) gCACGGTATTGTGATGATTGCTGATGAAGTGCAAAGCGGCTTTGCGCGTACCGGTAAGCTGTTTGCCATgg < 1:5162724/71‑1 (MQ=255) cACGGTATTGTGATGATTGCTGATGAAGTGCAAAGCGGCTTTGCGCGTACCgg > 1:2652280/1‑53 (MQ=255) cACGGGATCATGCTGATTGCCGATGAAGTGCAGAgcg > 1:2712028/1‑37 (MQ=255) cACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTGTTTGCGATg > 1:2924971/1‑69 (MQ=255) gggATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTGTTTGCGATGGAGCa < 1:2439660/71‑1 (MQ=255) tCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTg < 1:3937224/53‑1 (MQ=255) tCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTGTTTGCGATGGAGCAGATg > 1:606700/1‑71 (MQ=255) | AGGCGGTTTCTACGCCTCGTCGCCAGCCTTTATGCAGCGTTTACGCGCTCTGTGTGACGAGCACGGGATCATGCTGATTGCCGATGAAGTGCAGAGCGGCGCGGGGCGTACCGGCACGCTGTTTGCGATGGAGCAGATG > minE/1792249‑1792387 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |