| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,826,240 | T→C | 29.1% | E28E (GAA→GAG) | hydN ← | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,826,240 | 0 | T | C | 29.1% | 171.2 / 77.3 | 110 | E28E (GAA→GAG) | hydN | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| Reads supporting (aligned to +/- strand): ref base T (45/33); new base C (17/15); total (62/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 113 total aligned reads displayed.
TGTTCACACCTTTAATGACATGGATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAA > minE/1826170‑1826307 | tGTTCACACCTTTAATGACATGGATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGAttt > 1:2348571/1‑71 (MQ=255) acacCTTTAATGACATGGATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCt > 1:3577443/1‑70 (MQ=255) acacCTTTAATGACATGGATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCt > 1:4775503/1‑70 (MQ=255) cacCTTTAATGACATGGATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCtga < 1:5383607/71‑1 (MQ=255) tttAATGACATGGATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCtgat > 1:5689004/1‑68 (MQ=255) aTGGATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCt > 1:5190936/1‑56 (MQ=255) gATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACcacgcacg > 1:3602715/1‑71 (MQ=255) gATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACcacgcacg > 1:1488008/1‑71 (MQ=255) gATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCGCGCACg > 1:3988531/1‑71 (MQ=255) cgcgGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGaaa > 1:4173205/1‑58 (MQ=255) gTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATgaga < 1:5510429/52‑1 (MQ=255) tAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTc < 1:4209967/42‑1 (MQ=255) tAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTcac < 1:612773/71‑1 (MQ=255) tAAAAAAGTTTCCGGGGGCAGCGATGCACAGTCCTGATTTTc < 1:4191548/42‑1 (MQ=255) aaaaaaGTTTCCTGGGTCAGCGATGCACAGTCCTGATTTTca > 1:2592121/1‑41 (MQ=39) aaaaaGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCtgat < 1:5298269/45‑1 (MQ=255) aaaaGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAgg < 1:4945897/71‑1 (MQ=255) aaaGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGt < 1:3883524/71‑1 (MQ=255) aaGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTa > 1:2947631/1‑71 (MQ=255) tttCCGGGGTCAGCGATGCACAGTCCTGATTTTCCt < 1:5361557/36‑1 (MQ=255) tttCCGGGGTCAGCGATGCACAGTCCTGATTTTCCt < 1:4469653/36‑1 (MQ=255) ttCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACgg > 1:737801/1‑70 (MQ=255) tCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAAcca > 1:96347/1‑45 (MQ=255) tCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTcac > 1:1112419/1‑61 (MQ=255) ggggTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAAc > 1:5412158/1‑70 (MQ=255) ggTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCaa < 1:2852499/71‑1 (MQ=255) cAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCa > 1:2704404/1‑42 (MQ=255) aGCGATGCACAGTCCTGATTTTCCTGATGAGAAAcca > 1:4041080/1‑36 (MQ=255) aGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACTCACGCTACTACACAGGTACGGCAACCAATACa > 1:508002/1‑71 (MQ=255) aGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTa > 1:3008819/1‑57 (MQ=255) aGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCaa > 1:4262611/1‑67 (MQ=255) aGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCaa > 1:4462017/1‑67 (MQ=255) aGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATAc < 1:3326430/70‑1 (MQ=255) aGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACa > 1:1007127/1‑71 (MQ=255) gCGATGCACAGTCCTGATTTTACTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACa < 1:765359/70‑1 (MQ=255) cGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACAtt > 1:3295559/1‑71 (MQ=255) cGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACAtt < 1:4151053/71‑1 (MQ=255) cGATGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACAtt < 1:1007139/71‑1 (MQ=255) aTGCACAGTCCTGATTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCAATACATTTa > 1:1894282/1‑71 (MQ=255) aTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAgg < 1:4132488/51‑1 (MQ=255) aTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAgg < 1:966424/51‑1 (MQ=255) aTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACATTTa < 1:1973093/71‑1 (MQ=255) tGCACAGTCCTGATTTTCCTGATGAGAAACCacgcacgc < 1:1415566/39‑1 (MQ=255) gCACAGTCCTGATTTTGCTGATGAGAAACCACGCACGCTACTTCACAGGTa > 1:3382647/1‑51 (MQ=38) gCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAg > 1:1436344/1‑48 (MQ=255) gCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAg > 1:4692973/1‑48 (MQ=255) gCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAg > 1:4513815/1‑48 (MQ=255) cacaGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTAc > 1:2238228/1‑51 (MQ=255) cacaGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTAc > 1:2244745/1‑51 (MQ=255) caatCCTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTcgc < 1:3192130/68‑1 (MQ=255) caatCCTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTcgc < 1:1102946/68‑1 (MQ=255) caatCCTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTcgc < 1:4541114/68‑1 (MQ=255) aatCCTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAgg < 1:1078367/43‑1 (MQ=12) aatCCTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAgg < 1:2021130/43‑1 (MQ=12) aatCCTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTcgca > 1:649410/3‑70 (MQ=255) aGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAgg < 1:181518/45‑1 (MQ=255) aGTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAgg < 1:1912060/45‑1 (MQ=255) gTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAgg < 1:1449875/44‑1 (MQ=255) gTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACATTTACt > 1:4059290/1‑66 (MQ=255) gTCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACATTTACt > 1:133643/1‑66 (MQ=255) atCCTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTcgcat > 1:4393609/2‑69 (MQ=255) atCCTGAATCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTcgcat < 1:1165970/70‑3 (MQ=255) tCCTGATTTTCCTTATGAGAAACCACGCACGCTACTTCACAGGTACGGc < 1:3634267/49‑1 (MQ=255) tCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGc < 1:5149652/49‑1 (MQ=255) tCCTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGc < 1:1982038/49‑1 (MQ=255) tCCTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACg > 1:2740211/1‑47 (MQ=16) cTGATTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAg > 1:880577/1‑71 (MQ=255) cTGATTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAg > 1:3502090/1‑71 (MQ=255) cTGATTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAg > 1:4335482/1‑71 (MQ=255) cTGATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACAt > 1:1394768/1‑58 (MQ=255) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTa > 1:4574773/1‑43 (MQ=12) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTa > 1:4594554/1‑43 (MQ=12) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTa > 1:5273999/1‑43 (MQ=12) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTa > 1:5233976/1‑43 (MQ=12) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTa > 1:3370833/1‑43 (MQ=12) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTa > 1:386318/1‑43 (MQ=12) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTa > 1:168476/1‑43 (MQ=12) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAAccga < 1:1103046/53‑3 (MQ=255) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACAt > 1:4947987/1‑58 (MQ=255) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACAt > 1:1124460/1‑58 (MQ=255) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACAt > 1:2844205/1‑58 (MQ=255) cTGATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTCGCATccg > 1:1523518/1‑69 (MQ=255) gATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACATTTACt > 1:3681554/1‑61 (MQ=255) gATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACATTTACt > 1:3799546/1‑61 (MQ=255) gATTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGc > 1:5298515/1‑70 (MQ=255) gATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCa < 1:4620319/46‑1 (MQ=16) gATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCa < 1:2131427/46‑1 (MQ=16) gATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCa < 1:4354397/46‑1 (MQ=16) gATTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTCGCATCCGc > 1:4850430/1‑70 (MQ=255) aTTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCa > 1:1634268/1‑45 (MQ=255) aTTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCaa > 1:5036326/1‑71 (MQ=255) aTTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCa > 1:3737640/1‑70 (MQ=255) aTTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCa < 1:2285167/70‑1 (MQ=255) aTTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACAt > 1:2524375/1‑55 (MQ=255) aTTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTcg > 1:515577/1‑62 (MQ=255) aTTTTCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGc < 1:1264433/69‑1 (MQ=255) aTTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTCGCATCCGc < 1:3267245/69‑1 (MQ=255) aTTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTCGCATCCGc < 1:4796910/69‑1 (MQ=255) aTTCTCATGATGCGACACTGCGCAAGCCACTTCACAGGTACGGCAACCGATACATTTCGTCGCATCCGCa < 1:3064599/70‑1 (MQ=255) ttCCTGATGAGAAACCACGCACGCTACTTCACAGGTACGGc < 1:2303942/41‑1 (MQ=255) | TGTTCACACCTTTAATGACATGGATACGCGGTAAAAAAGTTTCCGGGGTCAGCGATGCACAGTCCTGATTTTCCTGATGAGAAACCGCGCACGCTACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAA > minE/1826170‑1826307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |