| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,130,599 | C→G | 32.8% | L102L (CTG→CTC) | mtr ← | tryptophan transporter of high affinity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,130,599 | 0 | C | G | 32.8% | 152.4 / 102.4 | 119 | L102L (CTG→CTC) | mtr | tryptophan transporter of high affinity |
| Reads supporting (aligned to +/- strand): ref base C (40/40); new base G (20/19); total (60/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.48e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
ACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTG > minE/2130531‑2130668 | gTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATag < 1:4904743/71‑1 (MQ=255) aCATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATagag < 1:1318336/70‑1 (MQ=255) aCATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATagag < 1:4527283/70‑1 (MQ=255) aCATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATaga > 1:309727/1‑69 (MQ=255) tctcTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGat < 1:730225/61‑1 (MQ=255) tctcTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGat < 1:2468780/61‑1 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGatat > 1:1895592/1‑61 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGatat > 1:1395357/1‑61 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGatat > 1:4725327/1‑61 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGat < 1:1504521/59‑1 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGat < 1:4985590/59‑1 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGcaca > 1:4181047/1‑69 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGcaca > 1:5024971/1‑69 (MQ=255) tGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACaa < 1:3376644/68‑1 (MQ=255) aaGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAAt < 1:1850097/71‑1 (MQ=255) ggTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATgg < 1:2725584/71‑1 (MQ=255) gtgtGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1183978/71‑1 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:4441807/46‑1 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGcaca < 1:2728283/59‑1 (MQ=255) aTGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAAt > 1:838448/1‑63 (MQ=255) aTGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGc > 1:3914307/1‑71 (MQ=255) tGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGata < 1:1572467/45‑1 (MQ=255) cAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATgg < 1:3606152/62‑1 (MQ=255) aGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt < 1:4577236/71‑1 (MQ=255) aGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt < 1:5352501/71‑1 (MQ=255) aGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt < 1:2573442/71‑1 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACgaa > 1:2113700/3‑52 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACgaa > 1:4315429/3‑52 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:4399599/59‑2 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa < 1:2464514/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:126007/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2594640/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:814313/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt > 1:4628389/1‑70 (MQ=255) gaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAg > 1:1433660/2‑52 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATag < 1:545485/42‑1 (MQ=16) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:4173012/71‑2 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:1718479/71‑2 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:4250176/71‑2 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:5186317/71‑2 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaa < 1:1585121/59‑1 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc > 1:4458215/1‑70 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc > 1:2932335/1‑70 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc > 1:2605545/1‑70 (MQ=255) cGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaaa > 1:3769785/1‑59 (MQ=255) cGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaaa > 1:3640919/1‑59 (MQ=255) cGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaaa > 1:4121676/1‑59 (MQ=255) gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCa > 1:1514809/1‑70 (MQ=255) gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCAc > 1:1087905/1‑71 (MQ=255) aCCATTAGCAGAGATATAGGCATAAGTGATGATATAGAGAACGAAGGCAACggt < 1:2002172/54‑2 (MQ=255) aCCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGc < 1:2124470/48‑1 (MQ=255) ccACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGtt < 1:648042/71‑1 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCa > 1:1605069/1‑64 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:1466945/67‑1 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:2089049/67‑1 (MQ=255) cTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc > 1:2427702/1‑69 (MQ=255) ggCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAgg > 1:4455261/1‑41 (MQ=255) ggCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGc > 1:4944555/1‑71 (MQ=255) agCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:5219831/2‑44 (MQ=255) agCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:2620165/2‑44 (MQ=255) agCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGa < 1:1761793/58‑1 (MQ=255) gCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTCCAgg > 1:3911616/1‑69 (MQ=255) gCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGcc > 1:5184729/1‑71 (MQ=255) agagATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa > 1:3960139/1‑47 (MQ=255) agagATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa > 1:1194759/1‑47 (MQ=255) agagATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa > 1:2682723/1‑47 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:2351582/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:2284749/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:4209174/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:5092420/3‑63 (MQ=255) agatatAGGCATAAGTGAGGATATAAAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:5638411/3‑63 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCa > 1:1084562/1‑62 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCa > 1:3938836/1‑62 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCa > 1:2791634/1‑62 (MQ=255) atatAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGcc > 1:1800618/1‑71 (MQ=255) ataGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGccc < 1:3340983/70‑1 (MQ=255) taGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAg > 1:17965/1‑71 (MQ=255) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:1024268/38‑2 (MQ=16) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:3971318/38‑2 (MQ=16) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:3792709/38‑2 (MQ=16) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:1651353/50‑2 (MQ=255) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:652054/50‑2 (MQ=255) taGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGATAATGTTcc > 1:4705894/1‑58 (MQ=255) aGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGc > 1:3726080/1‑42 (MQ=255) aGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGc > 1:2967980/1‑42 (MQ=255) aGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc < 1:2449244/49‑1 (MQ=255) ggCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:5040106/36‑2 (MQ=16) ggCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa > 1:2596250/1‑38 (MQ=12) ggCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa > 1:1600465/1‑38 (MQ=12) gCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCa > 1:3476297/1‑70 (MQ=255) aTAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAAt < 1:5670630/71‑1 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:2542552/49‑1 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:3513886/49‑1 (MQ=255) tAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGt < 1:1523296/49‑1 (MQ=255) aGGTCAGGATATAGAGCACAAAGGCGATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCt > 1:2905092/1‑71 (MQ=255) ggTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc > 1:2629588/1‑49 (MQ=255) ggTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTc > 1:4955361/1‑49 (MQ=255) ggTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCttt < 1:1562379/57‑1 (MQ=255) ggTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACAACGTTc > 1:5291231/1‑49 (MQ=255) cAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCCGCAAATCTTTg > 1:2796383/1‑70 (MQ=255) | ACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTG > minE/2130531‑2130668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |