| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,374,528 | A→T | 26.8% | C178S (TGC→AGC) | tatD ← | DNase, magnesium‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,374,528 | 0 | A | T | 26.8% | 88.6 / 38.2 | 56 | C178S (TGC→AGC) | tatD | DNase, magnesium‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (21/20); new base T (6/9); total (27/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.89e-01 | |||||||||||
GATCAGTAATTTTTCCGCCGGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGCATCTCTTCGCGTGTG > minE/2374460‑2374592 | gATCAGTAATTTTTCCGCCGGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCaa < 1:2829695/70‑1 (MQ=255) aTTTTTCCGCCGGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCa < 1:892568/67‑1 (MQ=255) aTTTTTCCGCCGGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCg > 1:459562/1‑71 (MQ=255) aTTTTTCCGCCGGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCg > 1:2122918/1‑71 (MQ=255) ttttCCGCCGGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCgg > 1:4014855/1‑70 (MQ=255) tttCCGCCGGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCaa > 1:4789500/1‑65 (MQ=255) tttCCGCCGGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCaa > 1:337177/1‑65 (MQ=255) gccgGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGcc < 1:1942003/71‑1 (MQ=255) cgGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCaa < 1:216411/52‑1 (MQ=255) aaTCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAAcc > 1:4629738/1‑57 (MQ=255) aaTCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTaa > 1:5239245/1‑62 (MQ=255) aaTCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAAAGCCGata > 1:1593150/1‑70 (MQ=255) tCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCgg < 1:4400274/57‑1 (MQ=255) aaCGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAAc > 1:375258/1‑47 (MQ=255) aaCGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAAc > 1:832681/1‑47 (MQ=255) aCGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAAtt < 1:1523984/71‑1 (MQ=255) cGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTc < 1:599344/71‑1 (MQ=255) cccGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacg > 1:4840939/1‑71 (MQ=255) cccGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacg > 1:5587776/1‑71 (MQ=255) ccGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacgc < 1:4234168/71‑1 (MQ=255) ccGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacg > 1:1948260/1‑70 (MQ=255) cGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacgca > 1:2726293/1‑71 (MQ=255) gCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacgc > 1:560556/1‑69 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCaa < 1:5464082‑M1/12‑1 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCaa < 1:3815422‑M1/12‑1 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCAAc < 1:4304800‑M1/13‑1 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCAAc < 1:5605238‑M1/13‑1 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCAACCg < 1:296584‑M1/15‑1 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCAACCg < 1:3476691‑M1/15‑1 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCAACCGGt > 1:311424‑M1/24‑40 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCAACCGGt > 1:5203469‑M1/24‑40 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCAACCGGt > 1:4638053‑M1/24‑40 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCAACCGGt > 1:221378‑M1/24‑40 (MQ=255) actgcgtcttttactggctcttcTCGCTAACCCAACCGGTa < 1:315000‑M1/18‑1 (MQ=255) actgcgtcttttactggctcttcTCGCTAAACCAACCGGTa < 1:4281735‑M1/18‑1 (MQ=255) tgcgtcttttactggctcttcTCGCTAACCCAACCGGt > 1:1569305‑M1/22‑38 (MQ=255) gcgtcttttactggctcttcTCGCTAACCCAACCGGt > 1:181526‑M1/21‑37 (MQ=255) gCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGt < 1:2417244/37‑1 (MQ=255) gCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGt < 1:2252053/37‑1 (MQ=255) tcttttactggctcttcTCGCTAACCCAACCGGTaa < 1:4290858‑M1/19‑1 (MQ=255) ccAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATaaa > 1:5040273/1‑48 (MQ=255) cAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGc < 1:4269696/70‑1 (MQ=255) gTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAAt < 1:4933495/46‑1 (MQ=255) gTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTc < 1:1785000/48‑1 (MQ=255) cgcgTCGTTCATCGCAAACCCAACCGGTAATGCCGATATaa > 1:616850/1‑41 (MQ=255) cgcgTCGTTCATCGCAAACCCAACCGGTAATGCCGATATaa > 1:1964198/1‑41 (MQ=255) cgcgTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCAt > 1:3188071/1‑48 (MQ=255) cgcgTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGCATctct > 1:989722/1‑71 (MQ=255) cgcgTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGCATctct > 1:4817289/1‑71 (MQ=255) gtcgtTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGCATCTCTTc < 1:1363117/70‑1 (MQ=255) ttCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGCATctct < 1:2836345/64‑1 (MQ=255) ttCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGCATCTCTTCGCgt < 1:5316504/70‑1 (MQ=255) aTCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGCATCTCTTCGCGtgtg < 1:2937724/70‑1 (MQ=255) tCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGCATCTCTTcgc < 1:774073/64‑1 (MQ=255) cGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacg < 1:4241340/44‑1 (MQ=255) cGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacg < 1:340252/44‑1 (MQ=255) cGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacg < 1:3248664/44‑1 (MQ=255) cGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCcacg < 1:825951/44‑1 (MQ=255) aaaCCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGcc > 1:4064237/1‑47 (MQ=255) | GATCAGTAATTTTTCCGCCGGAATCAACGGCAAAAGTTCCCGCAGCTCCAGTCCGCGTCGTTCATCGCAAACCCAACCGGTAATGCCGATATAAATTCCATGCGCCACGCACGCCTGCATCTCTTCGCGTGTG > minE/2374460‑2374592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |