| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,415,809 | C→T | 23.2% | noncoding (70/77 nt) | proM ← | tRNA‑Pro |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,415,809 | 0 | C | T | 23.2% | 88.3 / 19.6 | 43 | noncoding (70/77 nt) | proM | tRNA‑Pro |
| Reads supporting (aligned to +/- strand): ref base C (18/15); new base T (5/5); total (23/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.81e-01 | |||||||||||
TGCGAAGGGAGGGTGACGAAATGCACAGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTGCGCTACCAAGCTGCGCTACTCGCC > minE/2415739‑2415877 | tGCGAAGGGAGGGTGACGAAATGCACAGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGc > 1:2154799/1‑71 (MQ=255) gCGAAGGGAGGGTGACGAAATGCACAGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGc > 1:3449086/1‑70 (MQ=255) ggagggTGACGAAATGCACAGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGagagag < 1:694645/71‑1 (MQ=255) gTGACGAAATGCACAGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGa < 1:3141884/68‑1 (MQ=255) gCACAGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTCGTCGGCGAGAGAGGATTCGAAc > 1:657077/1‑65 (MQ=255) cacaGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGAc > 1:5593864/1‑71 (MQ=255) cacaGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGAc > 1:1024987/1‑71 (MQ=255) acaGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGAcc < 1:3691230/71‑1 (MQ=255) acaGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGAcc < 1:4330351/71‑1 (MQ=255) caGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGAccc < 1:4732647/71‑1 (MQ=255) caGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGAccc < 1:4726192/71‑1 (MQ=255) caGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGAcc > 1:3209176/1‑70 (MQ=255) gAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCAc > 1:2324492/1‑71 (MQ=255) aCAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCa > 1:4755699/1‑66 (MQ=255) aCAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTgg > 1:548331/1‑70 (MQ=255) aaaaCCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTccc > 1:3533273/1‑70 (MQ=255) aaaaCCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCa < 1:4770576/71‑1 (MQ=255) aCCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGAcc < 1:5360046/57‑1 (MQ=255) ccgccgAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGa < 1:4475856/44‑1 (MQ=255) gAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTgcg > 1:3122587/1‑71 (MQ=255) gAAGCGGGGTTAAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTgcg > 1:3793516/1‑71 (MQ=255) gCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTgcg > 1:577056/1‑68 (MQ=255) gggTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAAcc < 1:5097850/58‑1 (MQ=255) ttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCag > 1:3108423/3‑70 (MQ=12) ttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCag < 1:2367851/69‑2 (MQ=12) ttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGc > 1:5014009/1‑71 (MQ=12) ttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGc > 1:468949/1‑71 (MQ=12) ttCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTgc < 1:4029939/61‑1 (MQ=255) cAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTGCGCTa > 1:3907592/1‑63 (MQ=255) cAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTGCGCTACCAAGCTg > 1:4132185/1‑71 (MQ=255) aaaaTTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCa > 1:1731257/1‑39 (MQ=255) aaaaTTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCa < 1:1771869/53‑1 (MQ=255) tttGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTgcgcc < 1:1308051/70‑2 (MQ=16) tttGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTgcgcc < 1:4180925/70‑2 (MQ=16) tttGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTgcg > 1:2772012/2‑69 (MQ=16) tttGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTgcg > 1:1922640/2‑69 (MQ=16) aTTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTGCGCTa > 1:4671372/1‑59 (MQ=255) aTTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTGCGCTa > 1:2281846/1‑59 (MQ=255) aTTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTGCGCTa > 1:1358257/1‑59 (MQ=255) ttGGTCGGTGATAGAGGATTCGAACCTCCGAcccc < 1:1540883/35‑2 (MQ=18) ttGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAAcc < 1:1723109/48‑1 (MQ=255) ttGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAAcc < 1:4283347/48‑1 (MQ=255) ggTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTAc < 1:3823222/57‑1 (MQ=12) ggCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTGCGCTACCAAGCTGCGCTACTCGcc < 1:1147009/71‑1 (MQ=255) gCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTGCGCTACCAAGCTGCGCTACTCGcc > 1:1599202/1‑70 (MQ=255) | TGCGAAGGGAGGGTGACGAAATGCACAGAAAACAAAAAACCCCGCCGAAGCGGGGTTCAAAATTGGTCGGCGAGAGAGGATTCGAACCTCCGACCCACTGGTCCCAAACCAGTTGCGCTACCAAGCTGCGCTACTCGCC > minE/2415739‑2415877 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |