| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,434,347 | T→C | 11.0% | intergenic (+99/‑37) | rhlB → / → gpp | ATP‑dependent RNA helicase/guanosine pentaphosphatase/exopolyphosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,434,347 | 0 | T | C | 11.0% | 251.5 / 16.4 | 91 | intergenic (+99/‑37) | rhlB/gpp | ATP‑dependent RNA helicase/guanosine pentaphosphatase/exopolyphosphatase |
| Reads supporting (aligned to +/- strand): ref base T (48/33); new base C (4/6); total (52/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.41e-01 | |||||||||||
TATCAAGATGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCTCGTCGCTGTATGCAGCCATTG > minE/2434283‑2434417 | tATCAAGATGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAg < 1:3800996/69‑1 (MQ=255)tATCAAGATGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAg < 1:1632874/69‑1 (MQ=255)tATCAAGATGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGc > 1:1956882/1‑70 (MQ=255) tCAAGATGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCaa > 1:398427/1‑71 (MQ=255) aaGATGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAaca > 1:2247963/1‑71 (MQ=255) aaGATGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAac < 1:80674/70‑1 (MQ=255) aGATGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAaca > 1:4882327/1‑70 (MQ=255) tGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAAcaca > 1:4886431/1‑69 (MQ=255) cggCAAGTGAGCGAATCCCGATGAGCTTACTCAGGTAAGTGATTCGGGGGAGCGAACGCAGCCAAGGCaga < 1:3762691/70‑1 (MQ=2) gCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAgaga < 1:769099/71‑1 (MQ=255) agagAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAg < 1:2893665/71‑1 (MQ=255) agagAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAg < 1:5298159/71‑1 (MQ=255) agagAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAg < 1:4304180/71‑1 (MQ=255) gagaATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCaa > 1:279177/1‑59 (MQ=255) gaatgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGcc > 1:4161099/1‑55 (MQ=255) aatgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATg < 1:2961155/49‑1 (MQ=255) aatgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATg < 1:4740567/49‑1 (MQ=255) aatgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGAtt > 1:4042398/1‑70 (MQ=255) aatgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTg < 1:5089868/71‑1 (MQ=255) atgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAg < 1:1837188/66‑1 (MQ=255) atgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTg < 1:1370517/70‑1 (MQ=255) tgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGcc > 1:4582472/1‑52 (MQ=255) tgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGcc > 1:724454/1‑52 (MQ=255) tgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGcc > 1:3701032/1‑52 (MQ=255) tgaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTg < 1:955518/69‑1 (MQ=255) gaatCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAacac < 1:4405530/56‑1 (MQ=255) aatCCCGATGAGCTTACTCAGGTAAGTGATTCGGGGGAGCGAACGCAGCCAAGGCAGAGGCGGCTTGAAg > 1:2506493/1‑70 (MQ=9) aatCCCGATGAGCTTACTCAGGTAAGTGATTCGGGGGAGCGAACGCAGCCAAGGCAGAGGCGGCTTGAAg > 1:1530604/1‑70 (MQ=9) atCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACag > 1:3718940/1‑56 (MQ=255) atCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACag > 1:5572557/1‑56 (MQ=255) atCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACag > 1:672959/1‑56 (MQ=255) cccGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGa > 1:1279910/1‑69 (MQ=255) ccGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATg > 1:3322455/1‑70 (MQ=255) ccGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATg < 1:121317/70‑1 (MQ=255) ccGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATg < 1:3958831/70‑1 (MQ=255) ccGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATg > 1:594413/1‑70 (MQ=255) ccGATGAGCTTACTGTAGTAAGTGATTCAGGGGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATg < 1:2059265/70‑1 (MQ=255) ccGATGAGCTTACTCAGGTAAGTGATTCGGGGGAGCGAACGCAGCCAAGGCAGAGGCGGCTTGAAGGATg > 1:3565310/1‑70 (MQ=9) ccGATGAGCTCACTCAGGTAAGTGATTCGGGGGAGCGAACGCAGCCAAGGCAGAGGCGGCTTGAAGGATg < 1:4671174/70‑1 (MQ=255) cGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGaa < 1:1773347/71‑1 (MQ=255) aTGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGaa > 1:5325034/1‑69 (MQ=255) aTGAGCTTACTCAGGTAAGTGATTCGGGGGAGCGAACGCAGCCAAGGCAGAGGCGGCTTGAAGGATg < 1:1081083/67‑1 (MQ=9) aTGAGCTTACTCAGGTAAGTGATTCGGGGGAGCGAACGCAGCCAAGGCAGAGGCGGCTTGAAGGATg < 1:128231/67‑1 (MQ=9) aTGAGCTTACTCAGGTAAGTGATTCGGGGGAGCGAACGCAGCCAAGGCAGAGGCGGCTTGAAGGATg < 1:1367101/67‑1 (MQ=9) tGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAagag < 1:564370/71‑1 (MQ=255) tGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAagag < 1:5655139/71‑1 (MQ=255) tGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAagag < 1:3058619/71‑1 (MQ=255) gAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGCGACAGATTGAAGGATGAagag > 1:2168033/1‑70 (MQ=255) gAGCTTACTCAGGTAAGTGATTCGTGGGAGCGAACGCAGCCAAGGCAGAGGCGGCTTGAAGGATGAagtg > 1:3677193/1‑68 (MQ=255) aGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTa > 1:3899367/1‑71 (MQ=255) aGCTTACTCAGGTAAGTGATTCGGGGGAGCGAACGCAGCCAAGGCAGAGGCGGCTTGAAGGATGAAgtgt < 1:2636176/70‑1 (MQ=9) cTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACaga < 1:3382326/46‑1 (MQ=255) cTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACaga < 1:567898/46‑1 (MQ=255) ttACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACaga < 1:1212478/45‑1 (MQ=255) ttACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACag < 1:5697365/44‑1 (MQ=255) tACTGTAGTAAGTGATTCAGGTGAAAGAATGAAGCCaa > 1:2602198/1‑38 (MQ=255) aCTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCa < 1:4020884/36‑1 (MQ=255) aCTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAgaga > 1:3698710/1‑45 (MQ=255) aCTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAgaga > 1:4518654/1‑45 (MQ=255) aCTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTa > 1:5067942/1‑66 (MQ=255) gtagtaAGTGATTCACGTGAAAGAATGCAGCCAACACag > 1:3747104/1‑39 (MQ=255) tagtaAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCa > 1:2404347/1‑71 (MQ=255) taAGTGATTCAGGTGAAAGAATGCAGCCAACACaga < 1:618693/36‑1 (MQ=255) aGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGa > 1:1790166/1‑48 (MQ=255) tGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCtcgtc > 1:1550582/1‑71 (MQ=255) tGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCtcgtc > 1:2311966/1‑71 (MQ=255) tGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCtcgtc > 1:2891341/1‑71 (MQ=255) tGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATCAAGAGTATGGGTTCCACAtcgtc > 1:5458551/1‑71 (MQ=255) gATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCtcgtcg > 1:4667734/1‑71 (MQ=255) ttCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGaa < 1:3243562/47‑1 (MQ=255) ttCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGaa < 1:1675654/47‑1 (MQ=255) ttCAGGGGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGaa < 1:3009514/47‑1 (MQ=255) cAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCTCGTCGCTg < 1:5350950/70‑1 (MQ=255) aGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCTCGTCGCTGt < 1:2491598/70‑1 (MQ=255) tGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGaa > 1:3101460/1‑41 (MQ=255) tGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCTCGTCGCTGTATGc < 1:3294857/71‑1 (MQ=255) gAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATggg > 1:1985509/1‑49 (MQ=255) gAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATggg > 1:3942289/1‑49 (MQ=255) aaaGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATggg > 1:5610772/1‑48 (MQ=255) aaaGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATggg > 1:4383222/1‑48 (MQ=255) aaaGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATggg > 1:1439269/1‑48 (MQ=255) aaaGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATggg > 1:922984/1‑48 (MQ=255) aaaGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATggg > 1:962305/1‑48 (MQ=255) aaaGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATgg > 1:4693506/1‑47 (MQ=255) aaaGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATgg > 1:3802152/1‑47 (MQ=255) gAATGCAGCCAACACAGAGAGAGATTGAAGGATGAAGAGTATGGGTTCCACCTCGTCGCTGTATGCAGCCa > 1:4839376/1‑71 (MQ=255) gAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCTCGTCGCTGTATGCAGCCa > 1:1944370/1‑71 (MQ=255) gAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCTCGTCGCTGTATGCAGCCa > 1:1017520/1‑71 (MQ=255) aaTGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCt > 1:2115110/1‑52 (MQ=255) aaTGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCt > 1:2340350/1‑52 (MQ=255) aaTGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCt > 1:2739377/1‑52 (MQ=255) tGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCTCGTCGCTGTATGCAGCCATTg < 1:2741606/71‑1 (MQ=255) | TATCAAGATGGCAAGAGAATGAATCCCGATGAGCTTACTGTAGTAAGTGATTCAGGTGAAAGAATGCAGCCAACACAGAGACAGATTGAAGGATGAAGAGTATGGGTTCCACCTCGTCGCTGTATGCAGCCATTG > minE/2434283‑2434417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |