| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,595,215 | T→G | 10.2% | T27T (ACA→ACC) ‡ | arsC ← | arsenate reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,595,215 | 0 | T | G | 10.2% | 232.6 / 21.3 | 98 | T27T (ACA→ACC) ‡ | arsC | arsenate reductase |
| Reads supporting (aligned to +/- strand): ref base T (41/47); new base G (3/7); total (44/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.62e-01 | |||||||||||
Only 100 of 111 total aligned reads displayed.
TATCGGCAATGAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGT > minE/2595145‑2595283 | tatCGGCAATGAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCt < 1:1297752/71‑1 (MQ=255) tCGGCAATGAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCtgt < 1:2903383/71‑1 (MQ=255) tCGGCAATGAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCtgt < 1:4015992/71‑1 (MQ=255) aTGAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCt < 1:1599215/71‑1 (MQ=255) aTGAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTGCTGTGCCGCt < 1:5434576/71‑1 (MQ=255) gAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTg > 1:3059578/1‑70 (MQ=255) gAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTg > 1:3610266/1‑70 (MQ=255) gAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTg > 1:4004157/1‑70 (MQ=255) gAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGt > 1:2506547/1‑71 (MQ=255) gAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGt > 1:1113835/1‑71 (MQ=255) aGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGtt > 1:3375841/1‑71 (MQ=255) tGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCg > 1:420386/1‑70 (MQ=255) tGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCg > 1:3540696/1‑70 (MQ=255) gTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGatcat > 1:5034946/1‑70 (MQ=255) ttCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGc < 1:3169537/62‑1 (MQ=255) ttCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCAtct < 1:4188503/71‑1 (MQ=255) ttCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCAtct < 1:1235344/71‑1 (MQ=255) cATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCt > 1:1001450/1‑47 (MQ=255) cATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCgg > 1:5314449/1‑62 (MQ=255) cATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCAtctc > 1:3720909/1‑70 (MQ=255) cATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCAtctc > 1:156286/1‑70 (MQ=255) aTCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCgg > 1:398630/1‑61 (MQ=255) aTCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTcc < 1:677122/70‑1 (MQ=255) cgcgcgTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGc < 1:3772907/57‑1 (MQ=255) gcgcgTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCg < 1:1662411/71‑1 (MQ=255) gcgTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTa < 1:4507579/71‑1 (MQ=255) cgTTGGCGGAGTTTCCAGATAATGGATAATAGTCTGTTCTGTGCCGCTGTTGCGGatc < 1:5663473/58‑1 (MQ=255) cgTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGatc < 1:1422093/58‑1 (MQ=255) ttGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCtgt < 1:727457/40‑1 (MQ=255) ttGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCgg < 1:3189027/53‑1 (MQ=255) tGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCtg > 1:1582131/1‑38 (MQ=255) ggCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTAc < 1:1590286/70‑1 (MQ=255) gCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCg < 1:1617702/49‑1 (MQ=255) gCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTAcgc < 1:2444658/71‑1 (MQ=255) gCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTAcg < 1:772138/70‑1 (MQ=255) ggAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGa < 1:3161115/71‑1 (MQ=255) ggAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGa < 1:26413/71‑1 (MQ=255) aGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACg > 1:214205/1‑71 (MQ=255) gTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGt < 1:3291164/71‑1 (MQ=255) tttCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTg < 1:5458828/38‑1 (MQ=255) tttCCAGATAATAGATAATGGTCGGTTCTGTACCGCTGTTGCGGATCATCTCCAGCGTATTACGTGACGt < 1:1088262/70‑1 (MQ=255) ttCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCg < 1:4389756/56‑1 (MQ=255) ttCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGAc < 1:32204/67‑1 (MQ=255) tcgaGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGc > 1:3430818/4‑70 (MQ=255) tCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGtt > 1:3198932/1‑38 (MQ=255) tCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGat > 1:3112716/1‑44 (MQ=255) tCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGc > 1:3515282/1‑54 (MQ=255) tCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGc > 1:5279192/1‑54 (MQ=255) tCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGcc > 1:532932/1‑71 (MQ=255) ccAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCg > 1:2515271/1‑71 (MQ=255) gaGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGccac < 1:5354453/70‑3 (MQ=255) gaGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGcca < 1:4622529/69‑2 (MQ=255) gaGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGcca < 1:3918693/69‑2 (MQ=255) gaGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGcca < 1:1903951/69‑2 (MQ=255) cAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTAcgc < 1:2921762/61‑1 (MQ=255) cAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTAcgc < 1:2770303/61‑1 (MQ=255) aTAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCg < 1:4125509/50‑1 (MQ=255) aTAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCg < 1:2008825/50‑1 (MQ=255) aTAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCg < 1:1369154/50‑1 (MQ=255) aTGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCa > 1:4934723/1‑66 (MQ=255) aTGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCa > 1:3825895/1‑66 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAg < 1:3649309/42‑1 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAg < 1:2043411/42‑1 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAg < 1:1751469/42‑1 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAg < 1:589468/42‑1 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAg < 1:559705/42‑1 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAg < 1:3691019/42‑1 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTa > 1:631560/1‑46 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTa > 1:1638362/1‑46 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGt > 1:446952/1‑57 (MQ=255) gATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGt > 1:2619882/1‑71 (MQ=255) ataataGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGtt > 1:2615485/1‑71 (MQ=255) taataGTCGGTTCTGTGCC‑CTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTtgt < 1:552968/71‑1 (MQ=255) attgTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTtgt > 1:765989/4‑70 (MQ=255) ataGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTtgt < 1:1234973/70‑1 (MQ=255) taGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTa > 1:2146850/1‑44 (MQ=255) taGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTa > 1:2270696/1‑44 (MQ=255) taGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGcc < 1:5451187/55‑1 (MQ=255) taGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGcc < 1:3382434/55‑1 (MQ=255) gTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTAtt > 1:5068052/1‑41 (MQ=255) gTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCCTAtt > 1:4003727/1‑41 (MQ=255) gTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGa > 1:1025140/1‑69 (MQ=255) tCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATaa < 1:930599/71‑1 (MQ=255) tCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATaa < 1:1132343/71‑1 (MQ=255) tCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa < 1:3370188/70‑1 (MQ=255) cGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTa > 1:4416215/1‑37 (MQ=255) cGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATaaa > 1:5471374/1‑71 (MQ=255) ggTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAAt > 1:5296498/1‑71 (MQ=255) ggTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAAt < 1:1609557/71‑1 (MQ=255) gTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCg < 1:5081422/50‑1 (MQ=255) gTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCg < 1:3248690/50‑1 (MQ=255) gTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCg < 1:410810/50‑1 (MQ=255) ttCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATgg > 1:5562081/1‑71 (MQ=255) ttCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATgg < 1:5046617/71‑1 (MQ=255) cTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGt > 1:2132299/1‑70 (MQ=255) cTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGt < 1:1929783/70‑1 (MQ=255) cTGTGCCGCTGTTGCAGATCATCTCCAGCGTATTACGCGACGTGCCGCa > 1:3609444/1‑49 (MQ=255) tgtgCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGa < 1:4425046/39‑1 (MQ=255) tgtgCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCg < 1:5660910/53‑1 (MQ=255) tgtgCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCg < 1:2059901/53‑1 (MQ=255) | TATCGGCAATGAGTTTGACCAGTTCATCGCGCGTTGGCGGAGTTTCCAGATAATGGATAATAGTCGGTTCTGTGCCGCTGTTGCGGATCATCTCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGT > minE/2595145‑2595283 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |