| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,595,306 | C→A | 30.8% | intergenic (‑11/+2) | arsC ← / ← arsB | arsenate reductase/arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,595,306 | 0 | C | A | 30.8% | 257.6 / 98.6 | 149 | intergenic (‑11/+2) | arsC/arsB | arsenate reductase/arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base C (54/49); new base A (24/22); total (78/71) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 161 total aligned reads displayed.
TCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCAT > minE/2595237‑2595373 | tcCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:3971266/1‑71 (MQ=255)tcCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:5332946/1‑71 (MQ=255)tcCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:454615/1‑71 (MQ=255)tcCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:4863711/1‑71 (MQ=255) cAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCAt > 1:2904947/1‑70 (MQ=255) cAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCAt > 1:557149/1‑70 (MQ=255) gCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTa > 1:512151/1‑70 (MQ=255) gCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa < 1:3064936/67‑1 (MQ=255) cGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGTTAATGTTGCTCATATCAGTATCTCATTAc > 1:2334989/1‑70 (MQ=255) cGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTAc > 1:3241682/1‑70 (MQ=255) cGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa < 1:2069308/71‑1 (MQ=255) gTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACaa < 1:1465342/71‑1 (MQ=255) tATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa < 1:877463/69‑1 (MQ=255) tATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa < 1:1366060/69‑1 (MQ=255) ttACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCAtt > 1:1536322/1‑64 (MQ=255) ttACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGt > 1:5286726/1‑71 (MQ=255) aCGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg > 1:3929362/1‑70 (MQ=255) cgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg > 1:2678063/1‑67 (MQ=255) cgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa > 1:4694044/1‑68 (MQ=255) cgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa > 1:1196369/1‑68 (MQ=255) gTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACagagag < 1:1930385/71‑1 (MQ=255) gCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACagagagc > 1:2612185/1‑69 (MQ=255) ccGCAGGCGGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACg < 1:4105189/71‑1 (MQ=255) cacAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCgc > 1:5072877/3‑70 (MQ=255) cacAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCgc > 1:3576424/3‑70 (MQ=255) cacAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCgc < 1:3848867/69‑2 (MQ=255) gCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg < 1:4014259/58‑1 (MQ=255) ggCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACaaa > 1:5233959/1‑52 (MQ=255) ggCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACaaa > 1:4637427/1‑52 (MQ=255) ggCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGaca < 1:4191044/58‑3 (MQ=255) ggCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGaca < 1:586702/58‑3 (MQ=255) ggCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGaca < 1:1664765/58‑3 (MQ=255) ggCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACaa < 1:5605779/51‑1 (MQ=255) gCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGt > 1:960539/1‑53 (MQ=255) ccGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:2551138/1‑43 (MQ=255) ccGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:2642026/1‑43 (MQ=255) ggTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:2444134/1‑57 (MQ=255) ggTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:1329552/1‑57 (MQ=255) gTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAgc < 1:3826773/70‑1 (MQ=255) ttGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCgcc < 1:1653857/61‑3 (MQ=255) ttGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAgcgc < 1:340183/71‑1 (MQ=255) tgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:954753/50‑1 (MQ=255) tgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:2989208/50‑1 (MQ=255) gATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggc > 1:4396535/1‑70 (MQ=255) gATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:1982257/49‑1 (MQ=255) gATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:37804/49‑1 (MQ=255) aTAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGt < 1:3648858/42‑1 (MQ=38) aTAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACag > 1:3007442/1‑47 (MQ=255) aTAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACag > 1:3614619/1‑47 (MQ=255) tAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:3409390/47‑1 (MQ=255) tAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:4723629/47‑1 (MQ=255) tAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:4106394/47‑1 (MQ=255) tAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagccag < 1:2410854/71‑1 (MQ=255) agaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAg < 1:5335149/59‑1 (MQ=255) aaaTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagccagc > 1:3469632/1‑71 (MQ=255) aaaTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagccagc > 1:3462899/1‑71 (MQ=255) gaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccaga < 1:3367669/69‑2 (MQ=255) aTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGTGCCAGCGCAGCCAGCGt > 1:4839064/1‑71 (MQ=255) aTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGt < 1:5387995/71‑1 (MQ=255) aTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAgcg > 1:544843/1‑61 (MQ=255) tGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTc < 1:5228961/71‑1 (MQ=255) ggTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGtga > 1:2836887/1‑69 (MQ=255) tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACagaga < 1:439243/42‑1 (MQ=38) aaTGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:1638765/1‑41 (MQ=255) aaTGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca > 1:1251148/1‑70 (MQ=255) tGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagc < 1:155170/58‑1 (MQ=255) gTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagc > 1:4469462/1‑57 (MQ=255) gTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagc > 1:2162843/1‑57 (MQ=255) ttGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAg > 1:287879/1‑71 (MQ=255) ttGCTCATATCAGTATCTAATTACAAAGTGACagag > 1:5415446/1‑36 (MQ=37) ttGCTCATATCAGTATCTAATTACAAAGTGACagag > 1:3693737/1‑36 (MQ=37) ttGCTCATATCAGTATCTAATTACAAAGTGACaga > 1:837759/1‑35 (MQ=37) ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACa < 1:1086304/70‑1 (MQ=255) ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACa < 1:5067645/70‑1 (MQ=255) ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACa < 1:4281743/70‑1 (MQ=255) ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACa < 1:3899196/70‑1 (MQ=255) cTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGcac < 1:844464/71‑1 (MQ=255) cTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGca < 1:1061871/70‑1 (MQ=255) atatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACa < 1:5688686/64‑1 (MQ=255) atatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACa < 1:2459377/64‑1 (MQ=255) tatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAgc < 1:5650733/44‑1 (MQ=255) tatCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggcca < 1:4603532/51‑1 (MQ=255) tatCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggcca < 1:4323806/51‑1 (MQ=255) atCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACa > 1:2065172/1‑62 (MQ=255) atCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggcca > 1:2786411/1‑50 (MQ=255) tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTc > 1:2403905/1‑54 (MQ=255) tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag > 1:4892038/1‑71 (MQ=255) tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggca < 1:1831062/70‑1 (MQ=255) tCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccaga > 1:124132/1‑50 (MQ=255) aGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAggg < 1:977500/71‑1 (MQ=255) tATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGca < 1:3053832/60‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:2242025/51‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACaaa > 1:4709551/1‑53 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAg > 1:3134278/1‑56 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAg > 1:705235/1‑56 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag < 1:3355540/65‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag < 1:4290259/65‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCAt > 1:65953/1‑71 (MQ=255) tctaATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccag < 1:2731350/44‑1 (MQ=12) tctaATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:1518678/1‑71 (MQ=255) | TCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCAT > minE/2595237‑2595373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |