| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,595,782 | A→T | 13.8% | G272G (GGT→GGA) | arsB ← | arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,595,782 | 0 | A | T | 13.8% | 223.3 / 25.9 | 87 | G272G (GGT→GGA) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base A (42/33); new base T (9/3); total (51/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
GCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCAATG > minE/2595713‑2595848 | gCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTAc > 1:3936944/1‑71 (MQ=255) aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTccgg < 1:906572/71‑3 (MQ=255) tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTAccc < 1:299542/69‑1 (MQ=255) accaccAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAtt < 1:719264/71‑1 (MQ=255) caccaGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTaa < 1:257140/71‑1 (MQ=255) ccaGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATc < 1:2879642/71‑1 (MQ=255) caGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:3722434/71‑1 (MQ=255) aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg > 1:4186020/1‑70 (MQ=255) aTACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTaa > 1:2385229/1‑65 (MQ=255) aTACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGc < 1:5510319/69‑1 (MQ=255) aTACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCAt < 1:1668657/71‑1 (MQ=255) tACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAAt < 1:1845789/70‑1 (MQ=255) aCATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGa > 1:5107652/1‑71 (MQ=255) cATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGtg > 1:4378702/1‑57 (MQ=255) cATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGtg > 1:5689818/1‑57 (MQ=255) cATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAc > 1:1060550/1‑71 (MQ=255) cATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAc > 1:180481/1‑71 (MQ=255) tGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:2975736/59‑1 (MQ=255) ccGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:2361138/71‑1 (MQ=255) cgagcgagAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGt < 1:4160915/71‑1 (MQ=255) agcgagAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGt > 1:3451039/1‑69 (MQ=255) agcgagAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGt > 1:1319482/1‑69 (MQ=255) agaaaaTAACGATCTGCCATGGCGCACCGCGCAGGACTTTTccg > 1:1081720/1‑43 (MQ=255) gaagaTGACAATCTTCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:5332342/1‑65 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:2317579/1‑65 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:189617/1‑65 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGcga > 1:713254/1‑71 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgc > 1:1017289/1‑61 (MQ=255) aTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:4941705/45‑1 (MQ=255) aTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGcgacga > 1:4151440/1‑70 (MQ=255) aTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCgacgac < 1:4033741/71‑1 (MQ=255) aTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCgacgac < 1:1089310/71‑1 (MQ=255) tGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:3044607/1‑53 (MQ=255) tGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:2307392/1‑53 (MQ=255) tGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa < 1:694332/71‑1 (MQ=255) gACAATCTGCCAGGTGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc > 1:2381533/1‑63 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc > 1:2823252/1‑63 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc > 1:1600690/1‑63 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:1396365/1‑70 (MQ=255) aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACaaa < 1:4115735/71‑1 (MQ=255) aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACaaa < 1:1027949/71‑1 (MQ=255) cAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACaaa > 1:2115101/1‑70 (MQ=255) cAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaat < 1:3595832/71‑1 (MQ=255) aTCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:5520304/39‑1 (MQ=255) aTCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGt < 1:3955823/54‑1 (MQ=255) aTCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataa < 1:5658511/71‑1 (MQ=255) tCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACaaacag > 1:1109487/1‑67 (MQ=255) cTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACaaa > 1:3463228/1‑66 (MQ=255) ccATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCtttt > 1:334792/1‑51 (MQ=255) ccATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACaaacag < 1:3102050/66‑4 (MQ=255) ccAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataat < 1:5305533/67‑1 (MQ=255) ccAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAatat < 1:5287046/69‑1 (MQ=255) cAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAg > 1:4824907/1‑71 (MQ=255) aGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGc > 1:939516/1‑37 (MQ=255) ggggCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAgcgc < 1:5058683/71‑1 (MQ=255) cACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGcc < 1:3093418/70‑1 (MQ=255) aCCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCTTTTCGCCACCACaaa > 1:4772379/1‑54 (MQ=255) ccGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCca > 1:317747/1‑70 (MQ=255) cgcgCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCcaca < 1:3079868/71‑1 (MQ=255) cgcgCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCca > 1:3932763/1‑69 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataa > 1:3531616/1‑54 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAgcg > 1:4576056/1‑62 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAg > 1:3221159/1‑71 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAg > 1:533624/1‑71 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAg > 1:4817201/1‑71 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAg > 1:4191834/1‑71 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAg > 1:2575954/1‑71 (MQ=255) cgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGc > 1:3481100/1‑71 (MQ=255) cgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGc > 1:2619880/1‑71 (MQ=255) gcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGc > 1:4719319/1‑70 (MQ=255) gcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGc > 1:1332667/1‑70 (MQ=255) gcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCt < 1:649150/71‑1 (MQ=255) cAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTg > 1:4868977/1‑71 (MQ=255) cAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTg > 1:4706815/1‑71 (MQ=255) cAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTg > 1:2949618/1‑71 (MQ=255) ggACTTTACCCGTATTAATCGCATGACCGCGTTTAGcgac < 1:2011494/40‑1 (MQ=255) ggACTTTACCCGTATTAATCGCATGACCGCGTTTAGcgac < 1:1290140/40‑1 (MQ=255) ggACTTTACCCGTATTAATCGCATGACCGCGTTTAGcgac < 1:5274742/40‑1 (MQ=255) ggACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaat < 1:484439/47‑1 (MQ=255) ggACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGc > 1:3915310/1‑70 (MQ=255) gACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCaa < 1:548972/71‑1 (MQ=255) gACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCaa < 1:1299457/71‑1 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAataata > 1:3168700/1‑49 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAataata > 1:5628449/1‑49 (MQ=255) ttACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAg < 1:2908000/61‑1 (MQ=255) tACCCGTATTAATCGCATGACCGCGTTTAGcgacga > 1:4852765/1‑36 (MQ=255) tACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCAATg > 1:1924365/1‑68 (MQ=255) aCCCGTATTAATCGCATGACCGCGTTTAGCGACGACa < 1:5552354/37‑1 (MQ=255) aCCCGTATTAATCGCATGACCGCGTTTAGCGACGACa < 1:2451467/37‑1 (MQ=255) aCCCGTATTAATCGCATGACCGCGTTTAGCGACGACa < 1:3747462/37‑1 (MQ=255) aCCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCt > 1:2392865/1‑61 (MQ=255) aCCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCt > 1:3693062/1‑61 (MQ=255) | GCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCAATG > minE/2595713‑2595848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |